Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq4 136 3e-27
seq7 123 2e-23
seq2 109 5e-19
>seq4
Length=12290766
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || || || || | |||||||||||| | || ||||| || || ||||||||||||
Sbjct 488936 ATCCCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCG 488995
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| || ||| || || |||||||| || | || | ||||||||| || ||
Sbjct 488996 GACAAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGG 489055
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| ||| || ||| | | ||| | |||||| | | |||
Sbjct 489056 GGAATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCG 489115
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || ||||||||||||||||| || ||||| |||||
Sbjct 489116 ACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
>seq7
Length=16482863
Score = 123 bits (136), Expect = 2e-23
Identities = 168/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || || | ||| |||||||||| || |||||||||||||| || || ||
Sbjct 10792701 ATACCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCC 10792760
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || |||||| |||||||| ||||| |||| | | ||| || || |||
Sbjct 10792761 GACAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGA 10792820
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331
|||||||||||||| || || ||| | |||| | | |||| ||||| | || |||
Sbjct 10792821 GGAATGCCTTCTTTATCCTGGAT-TTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTC 10792879
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| || | ||| || || |||| || || || ||||| ||||||
Sbjct 10792880 TACTTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931
Score = 120 bits (132), Expect = 3e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || || || || | ||| || || || | || ||||||||||| || ||||| |||
Sbjct 10793613 ATGCCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCG 10793672
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| |||||||||||||| |||||| |||| | | |||||||| ||
Sbjct 10793673 GAAAGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGT 10793732
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| ||||| ||||| || | | |||| ||| || | | ||||
Sbjct 10793733 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCG 10793792
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| ||| | || ||||| ||||| ||||| || ||||| ||||||
Sbjct 10793793 ACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCATG 10793843
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || || || || | ||| || || || | || ||||| || || || |||||||||
Sbjct 10792929 ATGCCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCG 10792988
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| ||||| |||||||| ||||| |||| | | |||||||| ||
Sbjct 10792989 GAAAGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGT 10793048
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || |||||||| |||||| || | | |||| || || | | ||||
Sbjct 10793049 GGGATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCG 10793108
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| ||| | |||||||| ||||||||||| || ||||| ||||||
Sbjct 10793109 ACTTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCATG 10793159
Score = 109 bits (120), Expect = 5e-19
Identities = 165/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || || || || | ||| ||||| || | || |||||||||||||||||||| |||
Sbjct 10793157 ATGCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCG 10793216
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| || |||||| || ||||| || ||| |||| | | ||| || || ||
Sbjct 10793217 GAGAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGG 10793276
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331
||||| || |||||||| ||| ||| | ||| | | ||| | ||||| | | |||
Sbjct 10793277 GGAATCCCCTCTTTGTCCTGAAT-TTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTC 10793335
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| || | ||| || || |||| ||| ||||| || || ||||||
Sbjct 10793336 TACTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229
|||||| || || | || ||||| || || |||||||||||| || || || ||
Sbjct 10794086 CAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTC 10794145
Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289
||| ||||||||||||||| | || | ||||||||| || ||||| ||||| || |||||
Sbjct 10794146 TTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTTGTC 10794205
Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349
||||| ||| | | || | || || | || || || |||| || | ||
Sbjct 10794206 CTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATGGT 10794265
Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||||| || || || || || || || |||||
Sbjct 10794266 CTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229
||| || || || | || ||||| || || ||||||||||| | ||||| |||
Sbjct 10793858 CAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGCCCATC 10793917
Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289
||| |||||||| || || |||| | | |||||||| || || || ||||| || ||
Sbjct 10793918 TTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTATC 10793977
Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349
|||||| || | | ||||| ||||||| | |||||| |||| || | ||
Sbjct 10793978 CTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACTTCCAAAGTAATGGT 10794037
Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386
||| || |||| || || || || ||||||||| ||
Sbjct 10794038 TTTCCCAGTCAAGGTCTTGACGAAGATCTGCATGCCT 10794074
>seq2
Length=15265516
Score = 109 bits (120), Expect = 5e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224
||||| ||||||| || | || ||||| || || || ||||||||| | |||||
Sbjct 12970342 AGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGT 12970283
Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284
||| || || ||||| || ||| |||||||||| || || ||||| ||||| || |||
Sbjct 12970282 CCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCT 12970223
Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344
|| || |||||| ||| | | || | || || | | ||||| || | |||
Sbjct 12970222 TTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTG 12970163
Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| || ||||| ||||| ||||| || |||||||||||
Sbjct 12970162 ATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420123739352184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |