Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq5 206 5e-48
>seq5
Length=15459558
Score = 206 bits (228), Expect = 5e-48
Identities = 488/729 (67%), Gaps = 15/729 (2%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| || || ||||| ||||||||||| || ||||| || ||||| | | |||||||
Sbjct 2624339 CTTGCATTTTTCGCAGCCTCTGACGGAATCGTCAACGAAAACCTCGTCGAGAGGTTCAGC 2624398
Query 42483 AAAGAGGTGC-AGT-ACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540
| ||||||| ||| || || || |||||||| ||||| ||||| || || || || |
Sbjct 2624399 CAGGAGGTGCAAGTGAC--CGAAGCTCGCTGCTTTTACGGGTTCCAAATCGCTATTGAAA 2624456
Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC 42600
|| | || || ||| ||||| || || || | |||||||| || ||| |||
Sbjct 2624457 ACATCCATTCGGAGATGTACAGCATGTTGATCGAAACGTACATTTCTGAGCCCCAGGAG- 2624515
Query 42601 GTAACGGG---CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657
|| | | ||||||| || || |||||| ||||||| | ||||||||||| ||||
Sbjct 2624516 --AAGGAGTTCTTGTTCAATGCGATCGAGACGCTGCCCTGTGTTAAGAAGAAGGCCGACT 2624573
Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717
|||| | ||||| | || |||| || || ||||| | | || || |||
Sbjct 2624574 GGGCCTTGCTGTGGATAAACAGCAAGAACGCGACTTTTGGCGAACGAATCGTGGCGTTTG 2624633
Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777
|||||||||| || || |||||||| ||| ||| || || || |||||||| || ||
Sbjct 2624634 CCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCTTTGCTTCGATTTTCTGGCTTAAAAAG- 2624692
Query 42778 AGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836
|| || ||||| || ||||| || || || ||||| || ||||||||||| ||
Sbjct 2624693 CGGAATCTTATGCCAGGTCTCACATTTTCCAATGAACTGATTTCGAGGGACGAGGGCCTA 2624752
Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896
||| | || |||||||| | ||||||| ||| | ||| ||||| || || ||
Sbjct 2624753 CATTGCGATTTTGCCTGTTTGATGTTCTC---TCACTTGGTGCAGAAGCCGTCCAAAGAA 2624809
Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956
||| | | ||| ||| || || || | ||||||||||| ||| | || | |
Sbjct 2624810 CGGATTCAAAGCATTATCCAAGACGCGGTCAAAATCGAGAAGGAATTCTTGACTGAAGCT 2624869
Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016
| || || | || | || |||||| || | |||||| | |||||| | | ||
Sbjct 2624870 TTACCAGTCAGCATGATTGGAATGAACTGCGCTTTGATGTGCCAATACATCGAATTTGTG 2624929
Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076
|||||| | || || || |||| | |||||||| | | | || |||
Sbjct 2624930 GCCGACAGATTGTTGGGCGAGTTGGGGTGCGAGAAAATCTACAACTCACAGAATCCGTTC 2624989
Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136
|| || ||| || || || || |||||||| || || || |||||| || |
Sbjct 2624990 GATTTCATGACGATTATTTCCAACGAAGGCAAGACGAATTTCTTTGAGAAGAAAGTGGGG 2625049
Query 43137 GACTACCAG 43145
|| ||||||
Sbjct 2625050 GAATACCAG 2625058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944314623572320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |