Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5 206 5e-48 >seq5 Length=15459558 Score = 206 bits (228), Expect = 5e-48 Identities = 488/729 (67%), Gaps = 15/729 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || || ||||| ||||||||||| || ||||| || ||||| | | ||||||| Sbjct 2624339 CTTGCATTTTTCGCAGCCTCTGACGGAATCGTCAACGAAAACCTCGTCGAGAGGTTCAGC 2624398 Query 42483 AAAGAGGTGC-AGT-ACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 | ||||||| ||| || || || |||||||| ||||| ||||| || || || || | Sbjct 2624399 CAGGAGGTGCAAGTGAC--CGAAGCTCGCTGCTTTTACGGGTTCCAAATCGCTATTGAAA 2624456 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC 42600 || | || || ||| ||||| || || || | |||||||| || ||| ||| Sbjct 2624457 ACATCCATTCGGAGATGTACAGCATGTTGATCGAAACGTACATTTCTGAGCCCCAGGAG- 2624515 Query 42601 GTAACGGG---CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 || | | ||||||| || || |||||| ||||||| | ||||||||||| |||| Sbjct 2624516 --AAGGAGTTCTTGTTCAATGCGATCGAGACGCTGCCCTGTGTTAAGAAGAAGGCCGACT 2624573 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| | ||||| | || |||| || || ||||| | | || || ||| Sbjct 2624574 GGGCCTTGCTGTGGATAAACAGCAAGAACGCGACTTTTGGCGAACGAATCGTGGCGTTTG 2624633 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 |||||||||| || || |||||||| ||| ||| || || || |||||||| || || Sbjct 2624634 CCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCTTTGCTTCGATTTTCTGGCTTAAAAAG- 2624692 Query 42778 AGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 || || ||||| || ||||| || || || ||||| || ||||||||||| || Sbjct 2624693 CGGAATCTTATGCCAGGTCTCACATTTTCCAATGAACTGATTTCGAGGGACGAGGGCCTA 2624752 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 ||| | || |||||||| | ||||||| ||| | ||| ||||| || || || Sbjct 2624753 CATTGCGATTTTGCCTGTTTGATGTTCTC---TCACTTGGTGCAGAAGCCGTCCAAAGAA 2624809 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 ||| | | ||| ||| || || || | ||||||||||| ||| | || | | Sbjct 2624810 CGGATTCAAAGCATTATCCAAGACGCGGTCAAAATCGAGAAGGAATTCTTGACTGAAGCT 2624869 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 | || || | || | || |||||| || | |||||| | |||||| | | || Sbjct 2624870 TTACCAGTCAGCATGATTGGAATGAACTGCGCTTTGATGTGCCAATACATCGAATTTGTG 2624929 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 |||||| | || || || |||| | |||||||| | | | || ||| Sbjct 2624930 GCCGACAGATTGTTGGGCGAGTTGGGGTGCGAGAAAATCTACAACTCACAGAATCCGTTC 2624989 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 || || ||| || || || || |||||||| || || || |||||| || | Sbjct 2624990 GATTTCATGACGATTATTTCCAACGAAGGCAAGACGAATTTCTTTGAGAAGAAAGTGGGG 2625049 Query 43137 GACTACCAG 43145 || |||||| Sbjct 2625050 GAATACCAG 2625058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944314623572320