Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq4 163 3e-35
>seq4
Length=12290766
Score = 163 bits (180), Expect = 3e-35
Identities = 246/349 (70%), Gaps = 8/349 (2%)
Strand=Plus/Minus
Query 20240 CCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACT 20299
|| |||||||| |||| |||||| || || | |||||| || ||||| || || || ||
Sbjct 288626 CCTGTAACATGTGCAATCATATACGTCAACAAGGAATAACTTGCAATATTGAACGGCACC 288567
Query 20300 CCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACA 20359
|||| ||||| || ||||||| || |||| | ||| || | || || | || |||
Sbjct 288566 CCCAGCCCCATATCAGCCGACCTTTGGTACAACAAACACGACAATTCCCCATTTGCCACA 288507
Query 20360 TAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTC 20419
|||| || | ||||||| ||||| || ||||| | | ||| | || |||
Sbjct 288506 AAAAACTGCACGAGGCAGTGACAAGGCGGGAGGGCCATTTCGGGAATATCCACTGGATTC 288447
Query 20420 CACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTAC 20479
||||||||||| |||||||| ||||||| || ||||| ||| || | || |
Sbjct 288446 CACGCACACATTATGATTCTCCTATCGTTGGGTTTATTACGAATTGTTTCGATAACATGA 288387
Query 20480 GACAATTGGTCAAACCCCTGGCCTGTATAGTC----AGCATCCGCGTCCACGTACGCCGC 20535
| ||||||||||| ||| || | || || |||||| || |||| | ||
Sbjct 288386 GCCAATTGGTCAATCCCTTGATTGGCGTAATCCCAGTGCATCC----CCTTGTACTCGGC 288331
Query 20536 CCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCC 20584
||||||||| | |||||||||||| ||||| ||||||| ||| ||||||
Sbjct 288330 CCCAAAGTGGCGCCACTGGAAACCATAAACCGGTCCCAGATCGCCCTCC 288282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441361313272880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |