Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq4 163 3e-35 >seq4 Length=12290766 Score = 163 bits (180), Expect = 3e-35 Identities = 246/349 (70%), Gaps = 8/349 (2%) Strand=Plus/Minus Query 20240 CCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACT 20299 || |||||||| |||| |||||| || || | |||||| || ||||| || || || || Sbjct 288626 CCTGTAACATGTGCAATCATATACGTCAACAAGGAATAACTTGCAATATTGAACGGCACC 288567 Query 20300 CCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACA 20359 |||| ||||| || ||||||| || |||| | ||| || | || || | || ||| Sbjct 288566 CCCAGCCCCATATCAGCCGACCTTTGGTACAACAAACACGACAATTCCCCATTTGCCACA 288507 Query 20360 TAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTC 20419 |||| || | ||||||| ||||| || ||||| | | ||| | || ||| Sbjct 288506 AAAAACTGCACGAGGCAGTGACAAGGCGGGAGGGCCATTTCGGGAATATCCACTGGATTC 288447 Query 20420 CACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTAC 20479 ||||||||||| |||||||| ||||||| || ||||| ||| || | || | Sbjct 288446 CACGCACACATTATGATTCTCCTATCGTTGGGTTTATTACGAATTGTTTCGATAACATGA 288387 Query 20480 GACAATTGGTCAAACCCCTGGCCTGTATAGTC----AGCATCCGCGTCCACGTACGCCGC 20535 | ||||||||||| ||| || | || || |||||| || |||| | || Sbjct 288386 GCCAATTGGTCAATCCCTTGATTGGCGTAATCCCAGTGCATCC----CCTTGTACTCGGC 288331 Query 20536 CCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCC 20584 ||||||||| | |||||||||||| ||||| ||||||| ||| |||||| Sbjct 288330 CCCAAAGTGGCGCCACTGGAAACCATAAACCGGTCCCAGATCGCCCTCC 288282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441361313272880