Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1176 104 2e-17 seq536 104 2e-17 seq634 86.0 5e-12 seq577 86.0 5e-12 >seq1176 Length=17792 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 5779 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 5720 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || |||||| |||| ||| || ||||| Sbjct 5719 CCATAACTGATTTAATGAGCCTTTCGCGGTTTCACCTTAA 5680 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 5779 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 5720 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || |||||| |||| ||| || ||||| Sbjct 5719 CCATAACTGATTTAATGAGCCTTTCGCGGTTTCACCTTAA 5680 >seq536 Length=16808 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 6989 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 7048 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || |||||| |||| ||| || ||||| Sbjct 7049 CCATAACTGATTTAATGAGCCTTTCGCGGTTTCACCTTAA 7088 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 6989 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 7048 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || |||||| |||| ||| || ||||| Sbjct 7049 CCATAACTGATTTAATGAGCCTTTCGCGGTTTCACCTTAA 7088 >seq634 Length=16669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGA 115585 ||||||||| |||||||||||||||| ||| ||||||||| || | | ||||||||| Sbjct 16152 TCATGTATTAGCTCTAGAATTACCACAGTTGTCCAAGTAAATGTGGGGACCATCTAAGGA 16093 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 115625 ||| ||||||| || |||||| |||| ||| || |||| Sbjct 16092 GCCATAACTGATTTAATGAGCCCTTCGCGGTTTCACCTTA 16053 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGA 114388 ||||||||| |||||||||||||||| ||| ||||||||| || | | ||||||||| Sbjct 16152 TCATGTATTAGCTCTAGAATTACCACAGTTGTCCAAGTAAATGTGGGGACCATCTAAGGA 16093 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 114428 ||| ||||||| || |||||| |||| ||| || |||| Sbjct 16092 GCCATAACTGATTTAATGAGCCCTTCGCGGTTTCACCTTA 16053 >seq577 Length=19300 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGA 115585 ||||||||| |||||||||||||||| ||| ||||||||| || | | ||||||||| Sbjct 2958 TCATGTATTAGCTCTAGAATTACCACAGTTGTCCAAGTAAATGTGGGGACCATCTAAGGA 2899 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 115625 ||| ||||||| || |||||| |||| ||| || |||| Sbjct 2898 GCCATAACTGATTTAATGAGCCCTTCGCGGTTTCACCTTA 2859 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGA 114388 ||||||||| |||||||||||||||| ||| ||||||||| || | | ||||||||| Sbjct 2958 TCATGTATTAGCTCTAGAATTACCACAGTTGTCCAAGTAAATGTGGGGACCATCTAAGGA 2899 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 114428 ||| ||||||| || |||||| |||| ||| || |||| Sbjct 2898 GCCATAACTGATTTAATGAGCCCTTCGCGGTTTCACCTTA 2859 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGA 115585 ||||||||| |||||||||||||||| ||| ||||||||| || | | ||||||||| Sbjct 4513 TCATGTATTAGCTCTAGAATTACCACAGTTGTCCAAGTAAATGTGGGGACCATCTAAGGA 4454 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 115625 ||| ||||||| || |||||| |||| ||| || |||| Sbjct 4453 GCCATAACTGATTTAATGAGCCCTTCGCGGTTTCACCTTA 4414 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGA 114388 ||||||||| |||||||||||||||| ||| ||||||||| || | | ||||||||| Sbjct 4513 TCATGTATTAGCTCTAGAATTACCACAGTTGTCCAAGTAAATGTGGGGACCATCTAAGGA 4454 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 114428 ||| ||||||| || |||||| |||| ||| || |||| Sbjct 4453 GCCATAACTGATTTAATGAGCCCTTCGCGGTTTCACCTTA 4414 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGA 115585 ||||||||| |||||||||||||||| ||| ||||||||| || | | ||||||||| Sbjct 7598 TCATGTATTAGCTCTAGAATTACCACAGTTGTCCAAGTAAATGTGGGGACCATCTAAGGA 7539 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 115625 ||| ||||||| || |||||| |||| ||| || |||| Sbjct 7538 GCCATAACTGATTTAATGAGCCCTTCGCGGTTTCACCTTA 7499 Score = 86.0 bits (94), Expect = 5e-12 Identities = 81/100 (81%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGA 114388 ||||||||| |||||||||||||||| ||| ||||||||| || | | ||||||||| Sbjct 7598 TCATGTATTAGCTCTAGAATTACCACAGTTGTCCAAGTAAATGTGGGGACCATCTAAGGA 7539 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 114428 ||| ||||||| || |||||| |||| ||| || |||| Sbjct 7538 GCCATAACTGATTTAATGAGCCCTTCGCGGTTTCACCTTA 7499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397052324789764