Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq7 147 5e-30
seq2 143 6e-29
seq4 118 3e-21
>seq7
Length=16482863
Score = 147 bits (162), Expect = 5e-30
Identities = 175/235 (74%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| ||||| | | ||| | || | || ||||||||| || || ||||
Sbjct 10793156 CATG-CCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGT 10793214
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| ||| || || || ||||| | ||||| || |||||||||| | ||| ||| |
Sbjct 10793215 CGGAGAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGA---T 10793271
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| || || ||||| ||||| |||||||| || |||||||| |||| || |
Sbjct 10793272 CTGGGGGAATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATG 10793331
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||||||| | |||||||||||||| |||| |||||| ||||| || |||||
Sbjct 10793332 GTTCTACTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386
Score = 136 bits (150), Expect = 9e-27
Identities = 148/195 (76%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||||||||| ||||||||||| | || ||||| || ||||| | |||||| || || ||
Sbjct 10792739 TTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAA 10792798
Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||||| | ||| || |||| || || |||||||||||||||||||| ||||| ||
Sbjct 10792799 GATCAACCTCTGCTG---ATCTGGAGGAATGCCTTCTTTATCCTGGATTTTAGCTTTAAC 10792855
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || || | || | ||||||||| | ||||||||||| || |||| |||||
Sbjct 10792856 ATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTT 10792915
Query 288459 GACGAATATCTGCAT 288473
||||| || |||||
Sbjct 10792916 CACGAAAATTTGCAT 10792930
Score = 131 bits (144), Expect = 4e-25
Identities = 146/194 (75%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||||| ||| ||||| || || || || ||||| || |||||
Sbjct 10793424 TCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAA 10793483
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| | || ||| |||||| || || ||||| ||||| |||||||| ||||||
Sbjct 10793484 ATCAATCTTTGCTGA---TCTGGGGGAATCCCCTCTTTGTCCTGAATTTTCGCCTTCACG 10793540
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| || | || | ||| ||||| || |||||||| || || |||| ||||||
Sbjct 10793541 TTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTC 10793600
Query 288460 ACGAATATCTGCAT 288473
||||| || |||||
Sbjct 10793601 ACGAAAATTTGCAT 10793614
Score = 129 bits (142), Expect = 1e-24
Identities = 174/237 (73%), Gaps = 14/237 (6%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302
||||| ||||| || | |||| || ||||||| ||| ||| ||||||||||| |||||
Sbjct 10792473 TGTCCTCCGCGAAGACGTAAG-ACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTC 10792531
Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362
| || ||||| || ||||| || |||||||| || ||||||| | || || ||
Sbjct 10792532 CGAAAGTGTGCGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTG---GTC 10792588
Query 288363 TGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419
|||| || ||||| ||||| || ||||| || ||||| ||||| || | || |||
Sbjct 10792589 TGGGGGAATACCTTCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTC---CGA 10792645
Query 288420 T---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || ||||| | ||| || || ||||| |||| ||||| ||||| || |||||
Sbjct 10792646 TGGCTCAACTTCCAACGTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702
Score = 129 bits (142), Expect = 1e-24
Identities = 153/206 (74%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330
|||| ||| ||| || ||||| || || |||| | |||||||||||||| | ||||
Sbjct 10794096 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCGAGTTGT 10794155
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATT 288387
|| || ||||| |||| ||||||||| |||| ||||| || || || ||||||||
Sbjct 10794156 TTACCAGCGAAAATCAAACGCTGTTG---ATCTGGAGGGATGCCCTCCTTGTCCTGGATC 10794212
Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447
|| ||||| ||||| || || | ||| | || ||||| || ||||| ||||| ||
Sbjct 10794213 TTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATGGTCTTGCCA 10794272
Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| || |||||
Sbjct 10794273 GTGAGTGTCTTAACGAAGATTTGCAT 10794298
Score = 127 bits (140), Expect = 5e-24
Identities = 168/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| ||||| | | || | || | ||| ||||||||||||||| ||||
Sbjct 10793612 CATG-CCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGT 10793670
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || || || |||||||| | ||||||||| |||||||||| | |||||
Sbjct 10793671 CGGAAAGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTG 10793730
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|||||| ||||| || || ||||| || || || || || || || | ||| | ||
Sbjct 10793731 GTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTT 10793790
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || | ||||| ||||| || ||||| || |||||||| || |||||
Sbjct 10793791 CGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCAT 10793842
Score = 127 bits (140), Expect = 5e-24
Identities = 146/195 (75%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || ||||| || ||||| | | |||||||||||||| | |||||| || |||||
Sbjct 10794335 TTCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAA 10794394
Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||||| ||| || || ||| ||||| ||||| || |||||||| || ||||| ||
Sbjct 10794395 GATCAAACGTTGCTG---GTCTGGGGGGATACCTTCCTTGTCCTGGATCTTAGCTTTGAC 10794451
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|||||| || | |||| | || || || | ||||| || || || |||| ||||||
Sbjct 10794452 GTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTTTTACCAGTCAAAGTCTT 10794511
Query 288459 GACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 10794512 CACGAAGATCTGCAT 10794526
Score = 118 bits (130), Expect = 3e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330
|||| ||| ||| || ||||| || || || | ||| || || || ||||||| ||||
Sbjct 10793868 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGCCCATCTTCTAGTTGT 10793927
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || ||||||| | ||||| |||||| ||||| |||||||| || ||
Sbjct 10793928 TTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGAATCTTA 10793987
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| || |||||||| || | ||| | ||| ||||| | || || || ||||| |||
Sbjct 10793988 GCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTC 10794047
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
| ||||||||||| ||||||||
Sbjct 10794048 AAGGTCTTGACGAAGATCTGCAT 10794070
>seq2
Length=15265516
Score = 143 bits (158), Expect = 6e-29
Identities = 173/234 (74%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | |||||| | || || |||| ||| ||| || |||||||| || |||| |
Sbjct 12970351 CCACCTCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAG 12970292
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || ||||| || || | ||||| || |||||||| ||||| || ||| || |||
Sbjct 12970291 AGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGA---TCCGGG 12970235
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || ||||||||||| || || |||||||| || || |||| ||| || ||
Sbjct 12970234 GGAATCCCCTCTTTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCG 12970175
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| || || ||||| ||||| || ||||| || || ||||| ||||||||| ||
Sbjct 12970174 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCATTGTG 12970121
>seq4
Length=12290766
Score = 118 bits (130), Expect = 3e-21
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | | || | ||||| ||| ||| || ||||| || || ||||
Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| |||||||| || || | ||||| || || || |||| |||||||||| || |||
Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGA---TCGGGG 489055
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| || ||||| ||||||||||| || ||||| || | || | ||
Sbjct 489056 GGAATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCG 489115
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| ||||||||||| || ||||| || |||||
Sbjct 489116 ACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179622931981596
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |