Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 147 5e-30 seq2 143 6e-29 seq4 118 3e-21 >seq7 Length=16482863 Score = 147 bits (162), Expect = 5e-30 Identities = 175/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | | ||| | || | || ||||||||| || || |||| Sbjct 10793156 CATG-CCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGT 10793214 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| || || || ||||| | ||||| || |||||||||| | ||| ||| | Sbjct 10793215 CGGAGAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGA---T 10793271 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || ||||| ||||| |||||||| || |||||||| |||| || | Sbjct 10793272 CTGGGGGAATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATG 10793331 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||| | |||||||||||||| |||| |||||| ||||| || ||||| Sbjct 10793332 GTTCTACTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386 Score = 136 bits (150), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||||||||| | || ||||| || ||||| | |||||| || || || Sbjct 10792739 TTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAA 10792798 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| || |||| || || |||||||||||||||||||| ||||| || Sbjct 10792799 GATCAACCTCTGCTG---ATCTGGAGGAATGCCTTCTTTATCCTGGATTTTAGCTTTAAC 10792855 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || | ||||||||| | ||||||||||| || |||| ||||| Sbjct 10792856 ATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTT 10792915 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 10792916 CACGAAAATTTGCAT 10792930 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||||| ||| ||||| || || || || ||||| || ||||| Sbjct 10793424 TCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAA 10793483 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | || ||| |||||| || || ||||| ||||| |||||||| |||||| Sbjct 10793484 ATCAATCTTTGCTGA---TCTGGGGGAATCCCCTCTTTGTCCTGAATTTTCGCCTTCACG 10793540 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || | ||| ||||| || |||||||| || || |||| |||||| Sbjct 10793541 TTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTC 10793600 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 10793601 ACGAAAATTTGCAT 10793614 Score = 129 bits (142), Expect = 1e-24 Identities = 174/237 (73%), Gaps = 14/237 (6%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 ||||| ||||| || | |||| || ||||||| ||| ||| ||||||||||| ||||| Sbjct 10792473 TGTCCTCCGCGAAGACGTAAG-ACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTC 10792531 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 | || ||||| || ||||| || |||||||| || ||||||| | || || || Sbjct 10792532 CGAAAGTGTGCGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTG---GTC 10792588 Query 288363 TGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 |||| || ||||| ||||| || ||||| || ||||| ||||| || | || ||| Sbjct 10792589 TGGGGGAATACCTTCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTC---CGA 10792645 Query 288420 T---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| | ||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 10792646 TGGCTCAACTTCCAACGTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702 Score = 129 bits (142), Expect = 1e-24 Identities = 153/206 (74%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| || ||||| || || |||| | |||||||||||||| | |||| Sbjct 10794096 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCGAGTTGT 10794155 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATT 288387 || || ||||| |||| ||||||||| |||| ||||| || || || |||||||| Sbjct 10794156 TTACCAGCGAAAATCAAACGCTGTTG---ATCTGGAGGGATGCCCTCCTTGTCCTGGATC 10794212 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || ||||| ||||| || || | ||| | || ||||| || ||||| ||||| || Sbjct 10794213 TTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATGGTCTTGCCA 10794272 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||||| Sbjct 10794273 GTGAGTGTCTTAACGAAGATTTGCAT 10794298 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | | || | || | ||| ||||||||||||||| |||| Sbjct 10793612 CATG-CCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGT 10793670 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || || |||||||| | ||||||||| |||||||||| | ||||| Sbjct 10793671 CGGAAAGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTG 10793730 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| ||||| || || ||||| || || || || || || || | ||| | || Sbjct 10793731 GTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTT 10793790 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || | ||||| ||||| || ||||| || |||||||| || ||||| Sbjct 10793791 CGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCAT 10793842 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | | |||||||||||||| | |||||| || ||||| Sbjct 10794335 TTCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAA 10794394 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||| || || ||| ||||| ||||| || |||||||| || ||||| || Sbjct 10794395 GATCAAACGTTGCTG---GTCTGGGGGGATACCTTCCTTGTCCTGGATCTTAGCTTTGAC 10794451 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | |||| | || || || | ||||| || || || |||| |||||| Sbjct 10794452 GTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTTTTACCAGTCAAAGTCTT 10794511 Query 288459 GACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 10794512 CACGAAGATCTGCAT 10794526 Score = 118 bits (130), Expect = 3e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| || ||||| || || || | ||| || || || ||||||| |||| Sbjct 10793868 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGCCCATCTTCTAGTTGT 10793927 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||||| | ||||| |||||| ||||| |||||||| || || Sbjct 10793928 TTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGAATCTTA 10793987 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || |||||||| || | ||| | ||| ||||| | || || || ||||| ||| Sbjct 10793988 GCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTC 10794047 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | ||||||||||| |||||||| Sbjct 10794048 AAGGTCTTGACGAAGATCTGCAT 10794070 >seq2 Length=15265516 Score = 143 bits (158), Expect = 6e-29 Identities = 173/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | |||||| | || || |||| ||| ||| || |||||||| || |||| | Sbjct 12970351 CCACCTCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAG 12970292 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| || || | ||||| || |||||||| ||||| || ||| || ||| Sbjct 12970291 AGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGA---TCCGGG 12970235 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||||||||| || || |||||||| || || |||| ||| || || Sbjct 12970234 GGAATCCCCTCTTTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCG 12970175 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || ||||| ||||| || ||||| || || ||||| ||||||||| || Sbjct 12970174 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCATTGTG 12970121 >seq4 Length=12290766 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | || | ||||| ||| ||| || ||||| || || |||| Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||||| || || | ||||| || || || |||| |||||||||| || ||| Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGA---TCGGGG 489055 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || ||||| ||||||||||| || ||||| || | || | || Sbjct 489056 GGAATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCG 489115 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||||||||| || ||||| || ||||| Sbjct 489116 ACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179622931981596