Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 100 6e-16 >seq3 Length=31381287 Score = 100 bits (110), Expect = 6e-16 Identities = 208/310 (67%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 297253 TGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAACCATTCAC 297312 ||||||||| | || || || ||| ||||||||| || || || | |||||| || Sbjct 21014226 TGGATTGTAGTTGGGAATTTTCGTCATCCAACCGGTGCCTATACCGTCAGCACCATTAAC 21014167 Query 297313 CAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCATA 297372 || || |||| || | ||| | ||| || | ||||| ||||| | | || ||| | Sbjct 21014166 CAAAACCATCGGTATGATAGGAATATACCACACCGGTTCAATCTTCTGATTATCTTCAAA 21014107 Query 297373 CAGATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAG 297432 | || ||||| | || ||| || | | |||| | ||||| ||| || Sbjct 21014106 CTCATGTTTCAACAAATAATCATCGGAAGGATTAAAAATCATCCGAGTTAAAGGCGACAT 21014047 Query 297433 TTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAA 297492 ||||||||||| |||| | ||| ||| || || || ||| || | || |||||| Sbjct 21014046 CTTTGTGAAAATGTATCTCGGACTGGCGCTGTCTTTCCCTCCCGCCATCCGCGTACCGAA 21013987 Query 297493 CTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTT 297552 ||| || |||| |||| | || || |||||||| |||||| ||| || || | ||| Sbjct 21013986 CTGACCTCTCGGCTCCAACAAATTAATATTATTGCTACCGACAAAATTTTGAGCCAAGTT 21013927 Query 297553 CACGATGGTC 297562 ||||| ||| Sbjct 21013926 AACGATTGTC 21013917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102850579986700