Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq3 100 6e-16
>seq3
Length=31381287
Score = 100 bits (110), Expect = 6e-16
Identities = 208/310 (67%), Gaps = 0/310 (0%)
Strand=Plus/Minus
Query 297253 TGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAACCATTCAC 297312
||||||||| | || || || ||| ||||||||| || || || | |||||| ||
Sbjct 21014226 TGGATTGTAGTTGGGAATTTTCGTCATCCAACCGGTGCCTATACCGTCAGCACCATTAAC 21014167
Query 297313 CAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCATA 297372
|| || |||| || | ||| | ||| || | ||||| ||||| | | || ||| |
Sbjct 21014166 CAAAACCATCGGTATGATAGGAATATACCACACCGGTTCAATCTTCTGATTATCTTCAAA 21014107
Query 297373 CAGATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAG 297432
| || ||||| | || ||| || | | |||| | ||||| ||| ||
Sbjct 21014106 CTCATGTTTCAACAAATAATCATCGGAAGGATTAAAAATCATCCGAGTTAAAGGCGACAT 21014047
Query 297433 TTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAA 297492
||||||||||| |||| | ||| ||| || || || ||| || | || ||||||
Sbjct 21014046 CTTTGTGAAAATGTATCTCGGACTGGCGCTGTCTTTCCCTCCCGCCATCCGCGTACCGAA 21013987
Query 297493 CTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTT 297552
||| || |||| |||| | || || |||||||| |||||| ||| || || | |||
Sbjct 21013986 CTGACCTCTCGGCTCCAACAAATTAATATTATTGCTACCGACAAAATTTTGAGCCAAGTT 21013927
Query 297553 CACGATGGTC 297562
||||| |||
Sbjct 21013926 AACGATTGTC 21013917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102850579986700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |