Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq3 104 3e-17
seq5 82.4 9e-11
>seq3
Length=31381287
Score = 104 bits (114), Expect = 3e-17
Identities = 243/362 (67%), Gaps = 6/362 (2%)
Strand=Plus/Minus
Query 8637 TGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTC 8696
||| ||||| ||| ||||| ||| | || || | || || ||| ||| || ||||||
Sbjct 28597085 TGGATCGTGGTGAACTACCGTGAAGCTTACGGCATGTTCGCCTGCAACGGCATCCTCTTC 28597026
Query 8697 AACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATG--GTA 8754
|||||||| ||||| ||||| ||||| || || |||||| | ||
Sbjct 28597025 AACCACGAAAGCCCCCGACGTGGTGAAACCTTCGTCACGCGCAAAATCACCCGAGAAGTG 28596966
Query 8755 TCAAACAAATCGTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGA 8814
| || |||| | ||| | ||| | ||||||| || ||||| || | ||
Sbjct 28596965 GCCAA--AATCCACCTGGGGCTCACTCAGTGCCTTGAATTAGGCAACCTGGACTCGAAGC 28596908
Query 8815 GGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAG 8874
| |||||||| || ||||||||||| || || |||||||||||| | || || || |
Sbjct 28596907 GCGACTGGGGCCATGCCAAGGACTACGTGGAGGCCATGTGGCTCATGCTGCAGCAGCCCG 28596848
Query 8875 AGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGT 8934
|| ||||||| | ||| | || | |||||||| ||| || ||||||| ||||||
Sbjct 28596847 AGCCGGACGACTTCGTCATAGCTTCCGGGGAGACGCACAGTGTGCGGGAGTTTGTTGAGG 28596788
Query 8935 TGTGCTTT-AGGGAAGTTGGAAAGGTGGTCACATGGGAAGGTGAAGCCGAGGGGGAGGTG 8993
| ||||| || | || || |||| | | |||||||| | || || ||||||
Sbjct 28596787 CG-GCTTTCAGACACGTGGGGAAGGAGATTCTGTGGGAAGGGAGCGGCGTGGACGAGGTG 28596729
Query 8994 GG 8995
||
Sbjct 28596728 GG 28596727
>seq5
Length=15459558
Score = 82.4 bits (90), Expect = 9e-11
Identities = 174/255 (68%), Gaps = 5/255 (2%)
Strand=Plus/Minus
Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105
|||||| || || || |||||||| | || || |||||||| || || || ||
Sbjct 2624767 GGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACC 2624708
Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165
|||||| ||| |||||| || | ||||||||||| | ||| || |||||||| ||
Sbjct 2624707 TGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAAT 2624648
Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCG-ACTTTGTGTCAA 126224
|| || || || ||||| | || || || |||| | |||| ||| ||| |
Sbjct 2624647 CCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAG-TCGCGTTCTTGCTGTTTA 2624589
Query 126225 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTCA 126283
|||| || ||||| | ||||| |||| | ||| || | |||| |||||| || |
Sbjct 2624588 TCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGA 2624529
Query 126284 --AAGAGTTCCTTCT 126296
|||| |||||||
Sbjct 2624528 ACAAGAACTCCTTCT 2624514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597338053872560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |