Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 104 3e-17 seq5 82.4 9e-11 >seq3 Length=31381287 Score = 104 bits (114), Expect = 3e-17 Identities = 243/362 (67%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 8637 TGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTC 8696 ||| ||||| ||| ||||| ||| | || || | || || ||| ||| || |||||| Sbjct 28597085 TGGATCGTGGTGAACTACCGTGAAGCTTACGGCATGTTCGCCTGCAACGGCATCCTCTTC 28597026 Query 8697 AACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATG--GTA 8754 |||||||| ||||| ||||| ||||| || || |||||| | || Sbjct 28597025 AACCACGAAAGCCCCCGACGTGGTGAAACCTTCGTCACGCGCAAAATCACCCGAGAAGTG 28596966 Query 8755 TCAAACAAATCGTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGA 8814 | || |||| | ||| | ||| | ||||||| || ||||| || | || Sbjct 28596965 GCCAA--AATCCACCTGGGGCTCACTCAGTGCCTTGAATTAGGCAACCTGGACTCGAAGC 28596908 Query 8815 GGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAG 8874 | |||||||| || ||||||||||| || || |||||||||||| | || || || | Sbjct 28596907 GCGACTGGGGCCATGCCAAGGACTACGTGGAGGCCATGTGGCTCATGCTGCAGCAGCCCG 28596848 Query 8875 AGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGT 8934 || ||||||| | ||| | || | |||||||| ||| || ||||||| |||||| Sbjct 28596847 AGCCGGACGACTTCGTCATAGCTTCCGGGGAGACGCACAGTGTGCGGGAGTTTGTTGAGG 28596788 Query 8935 TGTGCTTT-AGGGAAGTTGGAAAGGTGGTCACATGGGAAGGTGAAGCCGAGGGGGAGGTG 8993 | ||||| || | || || |||| | | |||||||| | || || |||||| Sbjct 28596787 CG-GCTTTCAGACACGTGGGGAAGGAGATTCTGTGGGAAGGGAGCGGCGTGGACGAGGTG 28596729 Query 8994 GG 8995 || Sbjct 28596728 GG 28596727 >seq5 Length=15459558 Score = 82.4 bits (90), Expect = 9e-11 Identities = 174/255 (68%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || || || |||||||| | || || |||||||| || || || || Sbjct 2624767 GGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACC 2624708 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||| ||| |||||| || | ||||||||||| | ||| || |||||||| || Sbjct 2624707 TGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAAT 2624648 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCG-ACTTTGTGTCAA 126224 || || || || ||||| | || || || |||| | |||| ||| ||| | Sbjct 2624647 CCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAG-TCGCGTTCTTGCTGTTTA 2624589 Query 126225 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTCA 126283 |||| || ||||| | ||||| |||| | ||| || | |||| |||||| || | Sbjct 2624588 TCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGA 2624529 Query 126284 --AAGAGTTCCTTCT 126296 |||| ||||||| Sbjct 2624528 ACAAGAACTCCTTCT 2624514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597338053872560