Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7 107 2e-18 seq5 105 7e-18 seq8 100 3e-16 seq9 96.9 4e-15 seq2 96.9 4e-15 >seq7 Length=16482863 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | |||||| ||||| || | ||| ||||| || || |||||||| | | Sbjct 10794072 CCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 10794131 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || |||| || || || ||||||||||| || | ||||| || || | || Sbjct 10794132 AAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 10794191 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||||| ||| || ||||| || | | ||| || | || || Sbjct 10794192 ATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACT 10794251 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| || ||||||||||| Sbjct 10794252 TCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298 Score = 102 bits (112), Expect = 9e-17 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 || || ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 12852948 TTAATTAAAAAAAGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 12853007 Query 57052 ACATACTCACCACTATACTACCGAGGATTGA 57082 ||||| ||||||||||||||||||| ||| Sbjct 12853008 GGATACTGACCACTATACTACCGAGGACTGA 12853038 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 468445 AAAAAAAGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 468386 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | ||||||||||||||||||| || Sbjct 468385 TGACCACTATACTACCGAGGACTG 468362 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 13142200 AAAAAAGATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 13142141 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 13142140 TGACCACTATACTACCGAGGA 13142120 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 13148180 AAAAAAACTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 13148239 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 13148240 TGACCACTATACTACCGAGGA 13148260 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | |||||||||||| || | ||| ||||| || ||||||||||| | Sbjct 10792932 CCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 10792991 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| ||||| || || ||||| || || | || || ||||| | ||| Sbjct 10792992 AGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793051 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||| |||| | ||| | || | |||| || | | || || | ||| || Sbjct 10793052 ATACCCTCTTTGT-CTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGAC 10793110 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||||||||| || || || || || || |||||||| Sbjct 10793111 TTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158 >seq5 Length=15459558 Score = 105 bits (116), Expect = 7e-18 Identities = 82/97 (85%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 10923626 AAAAAAAGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 10923685 Query 57058 TCACCACTATACTACCGAGGAT---TGAATATATAAC 57091 | |||||||||||||||||||| |||||| ||||| Sbjct 10923686 TGACCACTATACTACCGAGGATTAATGAATAAATAAC 10923722 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 11471285 AAAAAAGTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 11471344 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 11471345 TGACCACTATACTACCGAGGA 11471365 >seq8 Length=14581690 Score = 100 bits (110), Expect = 3e-16 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| ||||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 10559041 GAAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 10558982 Query 57057 CTCACCACTATACTACCGAGGATTGAAT 57084 || ||||||||||||||||||| | ||| Sbjct 10558981 CTGACCACTATACTACCGAGGACTTAAT 10558954 >seq9 Length=16184580 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 11408373 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 11408314 Query 57067 TACTACCGAGGATTGAAT 57084 |||||||||||| || || Sbjct 11408313 TACTACCGAGGACTGTAT 11408296 >seq2 Length=15265516 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 4367965 AAAAAGGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4367906 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 4367905 TGACCACTATACTACCGAGGA 4367885 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 10114006 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 10114065 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 10114066 TACTACCGAGGA 10114077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543198662886880