Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq4 199 4e-46
seq7 116 4e-21
seq2 89.7 5e-13
>seq4
Length=12290766
Score = 199 bits (220), Expect = 4e-46
Identities = 982/1540 (64%), Gaps = 71/1540 (5%)
Strand=Plus/Minus
Query 153020 CAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCT 153079
|| || ||| || || ||||||||||| || | |||||| || |||| ||| | |||
Sbjct 1759301 CAGGTGCTGATTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGA 1759242
Query 153080 AGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCAT 153139
|||| | ||||| ||||| ||||| || | ||||| || || | || || |||||
Sbjct 1759241 AGTGTACGGTTCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCAT 1759182
Query 153140 GTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTG 153199
|||| | | ||||| || | |||| || | | ||||| |
Sbjct 1759181 TGGAGCCAAAAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGA 1759122
Query 153200 CCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACT 153259
||||||||||| | || || || ||||||||||||||| || || ||| ||||
Sbjct 1759121 CCAATCCCACAAATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACT 1759062
Query 153260 GGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGC 153319
| | || || || | || || ||||| || |||||||||||| |||||
Sbjct 1759061 GACCGGTGACCCTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGC 1759002
Query 153320 CTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTC 153379
||| | ||||| || || | |||||| ||||| || || | || ||
Sbjct 1759001 CTCCAAGGCGCCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGG 1758942
Query 153380 GCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCC 153439
||| || | ||||| ||||| || | || || || ||||| ||||| | || | ||
Sbjct 1758941 GCTATCAAAAGGCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCC 1758882
Query 153440 GA------TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATT 153493
| || | || | ||| || | ||||||| || | ||||||| |||
Sbjct 1758881 CACCGGCCTGTGGCGCAGATTCGACTTAC-GCGCCTCTGGC-----AAAGGATAGTAATT 1758828
Query 153494 GCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTC 153553
|||| || | |||||| | || |||| ||||| || || |||| | || |
Sbjct 1758827 CAGATCAATGACTTTGTTCAAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTT 1758768
Query 153554 GAAATCATAGGTCATTTCGTCGACGCGT--ACGCATCGATTCACGGCAATAGACGCCAGA 153611
|| || ||| | ||| ||| | ||| | || ||||| || || ||||
Sbjct 1758767 AAAGTCGTAGCCGCTCCTGTC--CGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAG 1758710
Query 153612 TTACAGACGGCCGTCTCTTCGGCGTCGCTGTA--CTGCACGATCTCGGCGCAGAGGTTGC 153669
||||||||||| | || |||| || | |||| || || || || | ||| | ||||
Sbjct 1758709 TTACAGACGGCGATTTCGTCGG-GT-GATGTAAACTCGACTATTTCCGTGCATAAATTGC 1758652
Query 153670 TGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGA 153729
||| | || ||| |||||||| || |||||||| | || || ||||||||| |||
Sbjct 1758651 TGCTCCTGATAGTGCCTAAATTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGA 1758592
Query 153730 GCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCG 153789
||||||| || ||| ||||| || || | || ||| | | |||| |||
Sbjct 1758591 GCATGTAAGGGGTGCCAGTCTCCACCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCG 1758532
Query 153790 CTCGCACCCG-CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAAC 153848
|| | | | | || | |||||| || || |||||||| ||||||| | || |||
Sbjct 1758531 CTGGTAACTGTCTAAC-ATAGCGACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAAC 1758473
Query 153849 TCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATA 153908
|| ||||| | || ||||| ||||| || |||| || ||||||||||| ||||| |
Sbjct 1758472 TCTTCGCCCCAACAATCGGCAAGGCCTGGTGACTGGTGTGGACACATCAGGGACCATTTC 1758413
Query 153909 TCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCG 153968
|||||| || || || |||||||||| || ||| ||| | ||| | | | ||||
Sbjct 1758412 TCGTCGTTTTTCACCCGGCGCATGAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCG 1758353
Query 153969 CGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTC-AGATTGAGCACGCTATAGATGTC 154027
|| ||| | | |||| ||| |||| ||| || || | | | | | || ||
Sbjct 1758352 CGTGCCCTTAGCTGCTCCTTCCCCGTGTTTTTCTTCAAGTTTAAAAAATCCA-AAATATC 1758294
Query 154028 GGCGTGCCAGGGTTCAATGTAGACGGC-CAGGGCACC--TTTACGCTTTCCGCCCTGATC 154084
||| ||||| || || | ||| | || || | | || | | || || || || ||
Sbjct 1758293 GGCATGCCAAGGCTCGAGGTAAATAGCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTC 1758234
Query 154085 GACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCG-------CTT- 154136
|||| |||| | ||||| || ||||||| | ||| | | ||| |||
Sbjct 1758233 CACGTAGCGCGCGGAGTTGTTAAAAACGCGCAAAACGGGCACAATCCCGTCTGAGACTTT 1758174
Query 154137 -GCGGTGCCGTTGGTCGAATTGATC------TTGCTGCCGCGGGCGCGCACTTGATGCAC 154189
| |||||| || | || || || || |||| ||| || | | || |
Sbjct 1758173 GGGGGTGCC---GGCCAAAGTGGTCCGAAAGGTGGTGCCTTTGGCCCGTAAGTTGTGAAT 1758117
Query 154190 GTTAACGCCAATGCCGCC-GCCGTACTTTG---AT-ATGGCAGCGCA----GTCGCCCAG 154240
| ||||| | ||||| ||||| |||| || |||||| || ||| |||
Sbjct 1758116 ACTGACGCCTAGACCGCCTGCCGT--TTTGGAAATCATGGCA---CATTGGGTCAAACAG 1758062
Query 154241 CGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAG---CAAGAAA-CACGAAC 154296
|| | ||||| |||| | || ||| ||| ||| | ||||| || ||
Sbjct 1758061 CG----CGAAATGCCCTCGAGATTGTCCTCGGGGA----GAGTTACGAGAAAGCAGGAGG 1758010
Query 154297 ACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTT 154356
| | ||| || || | ||| | || || ||||| || ||||| ||||| || || ||
Sbjct 1758009 AGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTGTAGGACTGGCGTGTGTGAAGTATT 1757950
Query 154357 TTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGA 154416
||| ||| | ||| ||||||||||| ||||| || |||||| |||||||
Sbjct 1757949 TTTCTGACATGTAGTTGTAAGTTTCGATGGCTGAGTCGATGTCTGAGCCGTGGATGCCGA 1757890
Query 154417 GCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGA 154476
||||||||||| |||||||| || || || || ||| | | || || || | |
Sbjct 1757889 CAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCAACGATTTTGCCGTTGATTTTAAGCA 1757830
Query 154477 GATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTA 154516
|| | |||||||||||| ||||||| || |||||
Sbjct 1757829 AGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTAATTGTA 1757790
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| ||||||| ||||||||||||||| | | | || ||||| || |||||||| ||| |
Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| || |||||||| | | | || | ||||||||| || || ||
Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| |||| | ||| | | ||| | |||||| | | ||| ||
Sbjct 489059 ATGCCTTCCTTGTC-CTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGAC 489117
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || ||||||||||| || ||||| |||||
Sbjct 489118 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 153810 CGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCG 153869
|| ||||| ||||| || ||||||||| |||||||| | ||| | || | || |
Sbjct 1761928 CGCCCCTCACTCTCATACTTTTCGTACAGTTTTTCAAACTCTTGGCCCCAACAATTGGGG 1761869
Query 153870 AGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGC 153929
|| || | || || ||||||||||| ||||| | |||||| || || || ||
Sbjct 1761868 AGACCTTGCGCTTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGTGC 1761809
Query 153930 ATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCG 153989
||||||| ||| |||||||| || ||||| | ||| || ||| | | || ||
Sbjct 1761808 ATGAACAAATCAGGCACCCACAGTGCGTATTGTAAGTCACGTGCCCGGTACTCATCTTTC 1761749
Query 153990 CCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTC 154042
|| | | ||||||| ||| || | | ||||||||| ||||| |||||
Sbjct 1761748 CCTGTCGTTCGTTTCAAATTTAGAAAATCAAGGATGTCGGCATGCCACGGTTC 1761696
>seq7
Length=16482863
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| | ||| | |||||| || || | | || ||||| || ||||||||||| |
Sbjct 10794300 CCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAC 10794359
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||| ||||||||||| || | |||| | ||| || ||||| || ||
Sbjct 10794360 AAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 10794419
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|||||||| ||||| ||| || ||| | | ||| | ||| |||| | ||| |||
Sbjct 10794420 ATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACC 10794479
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | ||||||||||||| ||| || || || ||||||||
Sbjct 10794480 TCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| ||||||| |||||| |||||||||| | |||| || |||||||| || ||||| |
Sbjct 10792704 CCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGAC 10792763
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || ||| || ||||||||||| || | | |||| | | ||| || || |||||
Sbjct 10792764 AGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 10792823
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| |||||||| || |||||| ||| | | || | ||||| | | || ||
Sbjct 10792824 ATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACT 10792883
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| | || | ||| || || |||| || || || ||||| ||||||
Sbjct 10792884 TCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| ||||| | ||||| ||||| || | |||| || ||||||||||||||||||
Sbjct 10793159 GCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGA 10793218
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || || ||||| ||||| |||| |||| | | ||| || || || ||
Sbjct 10793219 GAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGG 10793278
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || |||||||| ||| |||| | |||| | ||| | ||||| | | || |
Sbjct 10793279 AATCCCCTCTTTGTC-CTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTA 10793337
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
| || | || | ||| || ||||||| ||| ||||| || || ||||||
Sbjct 10793338 CTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || | || ||||||||| || || | | | || ||||| || |||||||| |||
Sbjct 10794071 GCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 10794130
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || ||| |||||||||||||| | | || | ||||||||| || |||||
Sbjct 10794131 CAAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGG 10794190
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || ||| | | || | || || | | ||| ||
Sbjct 10794191 GATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAAC 10794250
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || ||||| || || || || || || |||||
Sbjct 10794251 TTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298
>seq2
Length=15265516
Score = 89.7 bits (98), Expect = 5e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC 138462
||||||| || | | | || ||||| || || ||||| ||| | ||||| |||
Sbjct 12970336 AAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCATCC 12970277
Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522
||||| ||||| |||| |||| ||||| || || ||||| || || || ||||| ||
Sbjct 12970276 TCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCC 12970217
Query 138523 GTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581
||| | || | ||| | | || | || || | || ||| ||||| | || | ||
Sbjct 12970216 -TGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGT 12970158
Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| |||||||| ||||| || |||||||||||
Sbjct 12970157 CTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496249484771040
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