Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 199 4e-46 seq7 116 4e-21 seq2 89.7 5e-13 >seq4 Length=12290766 Score = 199 bits (220), Expect = 4e-46 Identities = 982/1540 (64%), Gaps = 71/1540 (5%) Strand=Plus/Minus Query 153020 CAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCT 153079 || || ||| || || ||||||||||| || | |||||| || |||| ||| | ||| Sbjct 1759301 CAGGTGCTGATTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGA 1759242 Query 153080 AGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCAT 153139 |||| | ||||| ||||| ||||| || | ||||| || || | || || ||||| Sbjct 1759241 AGTGTACGGTTCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCAT 1759182 Query 153140 GTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTG 153199 |||| | | ||||| || | |||| || | | ||||| | Sbjct 1759181 TGGAGCCAAAAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGA 1759122 Query 153200 CCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACT 153259 ||||||||||| | || || || ||||||||||||||| || || ||| |||| Sbjct 1759121 CCAATCCCACAAATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACT 1759062 Query 153260 GGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGC 153319 | | || || || | || || ||||| || |||||||||||| ||||| Sbjct 1759061 GACCGGTGACCCTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGC 1759002 Query 153320 CTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTC 153379 ||| | ||||| || || | |||||| ||||| || || | || || Sbjct 1759001 CTCCAAGGCGCCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGG 1758942 Query 153380 GCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCC 153439 ||| || | ||||| ||||| || | || || || ||||| ||||| | || | || Sbjct 1758941 GCTATCAAAAGGCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCC 1758882 Query 153440 GA------TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATT 153493 | || | || | ||| || | ||||||| || | ||||||| ||| Sbjct 1758881 CACCGGCCTGTGGCGCAGATTCGACTTAC-GCGCCTCTGGC-----AAAGGATAGTAATT 1758828 Query 153494 GCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTC 153553 |||| || | |||||| | || |||| ||||| || || |||| | || | Sbjct 1758827 CAGATCAATGACTTTGTTCAAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTT 1758768 Query 153554 GAAATCATAGGTCATTTCGTCGACGCGT--ACGCATCGATTCACGGCAATAGACGCCAGA 153611 || || ||| | ||| ||| | ||| | || ||||| || || |||| Sbjct 1758767 AAAGTCGTAGCCGCTCCTGTC--CGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAG 1758710 Query 153612 TTACAGACGGCCGTCTCTTCGGCGTCGCTGTA--CTGCACGATCTCGGCGCAGAGGTTGC 153669 ||||||||||| | || |||| || | |||| || || || || | ||| | |||| Sbjct 1758709 TTACAGACGGCGATTTCGTCGG-GT-GATGTAAACTCGACTATTTCCGTGCATAAATTGC 1758652 Query 153670 TGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGA 153729 ||| | || ||| |||||||| || |||||||| | || || ||||||||| ||| Sbjct 1758651 TGCTCCTGATAGTGCCTAAATTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGA 1758592 Query 153730 GCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCG 153789 ||||||| || ||| ||||| || || | || ||| | | |||| ||| Sbjct 1758591 GCATGTAAGGGGTGCCAGTCTCCACCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCG 1758532 Query 153790 CTCGCACCCG-CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAAC 153848 || | | | | || | |||||| || || |||||||| ||||||| | || ||| Sbjct 1758531 CTGGTAACTGTCTAAC-ATAGCGACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAAC 1758473 Query 153849 TCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATA 153908 || ||||| | || ||||| ||||| || |||| || ||||||||||| ||||| | Sbjct 1758472 TCTTCGCCCCAACAATCGGCAAGGCCTGGTGACTGGTGTGGACACATCAGGGACCATTTC 1758413 Query 153909 TCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCG 153968 |||||| || || || |||||||||| || ||| ||| | ||| | | | |||| Sbjct 1758412 TCGTCGTTTTTCACCCGGCGCATGAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCG 1758353 Query 153969 CGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTC-AGATTGAGCACGCTATAGATGTC 154027 || ||| | | |||| ||| |||| ||| || || | | | | | || || Sbjct 1758352 CGTGCCCTTAGCTGCTCCTTCCCCGTGTTTTTCTTCAAGTTTAAAAAATCCA-AAATATC 1758294 Query 154028 GGCGTGCCAGGGTTCAATGTAGACGGC-CAGGGCACC--TTTACGCTTTCCGCCCTGATC 154084 ||| ||||| || || | ||| | || || | | || | | || || || || || Sbjct 1758293 GGCATGCCAAGGCTCGAGGTAAATAGCGCAAGCCCCCGGTCTTTTGTTCCCCCCTTGGTC 1758234 Query 154085 GACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCG-------CTT- 154136 |||| |||| | ||||| || ||||||| | ||| | | ||| ||| Sbjct 1758233 CACGTAGCGCGCGGAGTTGTTAAAAACGCGCAAAACGGGCACAATCCCGTCTGAGACTTT 1758174 Query 154137 -GCGGTGCCGTTGGTCGAATTGATC------TTGCTGCCGCGGGCGCGCACTTGATGCAC 154189 | |||||| || | || || || || |||| ||| || | | || | Sbjct 1758173 GGGGGTGCC---GGCCAAAGTGGTCCGAAAGGTGGTGCCTTTGGCCCGTAAGTTGTGAAT 1758117 Query 154190 GTTAACGCCAATGCCGCC-GCCGTACTTTG---AT-ATGGCAGCGCA----GTCGCCCAG 154240 | ||||| | ||||| ||||| |||| || |||||| || ||| ||| Sbjct 1758116 ACTGACGCCTAGACCGCCTGCCGT--TTTGGAAATCATGGCA---CATTGGGTCAAACAG 1758062 Query 154241 CGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAG---CAAGAAA-CACGAAC 154296 || | ||||| |||| | || ||| ||| ||| | ||||| || || Sbjct 1758061 CG----CGAAATGCCCTCGAGATTGTCCTCGGGGA----GAGTTACGAGAAAGCAGGAGG 1758010 Query 154297 ACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTT 154356 | | ||| || || | ||| | || || ||||| || ||||| ||||| || || || Sbjct 1758009 AGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTGTAGGACTGGCGTGTGTGAAGTATT 1757950 Query 154357 TTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGA 154416 ||| ||| | ||| ||||||||||| ||||| || |||||| ||||||| Sbjct 1757949 TTTCTGACATGTAGTTGTAAGTTTCGATGGCTGAGTCGATGTCTGAGCCGTGGATGCCGA 1757890 Query 154417 GCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGA 154476 ||||||||||| |||||||| || || || || ||| | | || || || | | Sbjct 1757889 CAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCAACGATTTTGCCGTTGATTTTAAGCA 1757830 Query 154477 GATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTA 154516 || | |||||||||||| ||||||| || ||||| Sbjct 1757829 AGTAGGAACGCTCGAGGGTTTTGAAACCGAAGTAATTGTA 1757790 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||||||||||||| | | | || ||||| || |||||||| ||| | Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || |||||||| | | | || | ||||||||| || || || Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||| | | ||| | |||||| | | ||| || Sbjct 489059 ATGCCTTCCTTGTC-CTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGAC 489117 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || ||||||||||| || ||||| ||||| Sbjct 489118 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 153810 CGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCG 153869 || ||||| ||||| || ||||||||| |||||||| | ||| | || | || | Sbjct 1761928 CGCCCCTCACTCTCATACTTTTCGTACAGTTTTTCAAACTCTTGGCCCCAACAATTGGGG 1761869 Query 153870 AGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGC 153929 || || | || || ||||||||||| ||||| | |||||| || || || || Sbjct 1761868 AGACCTTGCGCTTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGTGC 1761809 Query 153930 ATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCG 153989 ||||||| ||| |||||||| || ||||| | ||| || ||| | | || || Sbjct 1761808 ATGAACAAATCAGGCACCCACAGTGCGTATTGTAAGTCACGTGCCCGGTACTCATCTTTC 1761749 Query 153990 CCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTC 154042 || | | ||||||| ||| || | | ||||||||| ||||| ||||| Sbjct 1761748 CCTGTCGTTCGTTTCAAATTTAGAAAATCAAGGATGTCGGCATGCCACGGTTC 1761696 >seq7 Length=16482863 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| | ||| | |||||| || || | | || ||||| || ||||||||||| | Sbjct 10794300 CCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAC 10794359 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| ||||||||||| || | |||| | ||| || ||||| || || Sbjct 10794360 AAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 10794419 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || ||| | | ||| | ||| |||| | ||| ||| Sbjct 10794420 ATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACC 10794479 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||||| ||| || || || |||||||| Sbjct 10794480 TCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| |||||| |||||||||| | |||| || |||||||| || ||||| | Sbjct 10792704 CCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGAC 10792763 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || ||||||||||| || | | |||| | | ||| || || ||||| Sbjct 10792764 AGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 10792823 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| || |||||| ||| | | || | ||||| | | || || Sbjct 10792824 ATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACT 10792883 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||| || || |||| || || || ||||| |||||| Sbjct 10792884 TCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | ||||| ||||| || | |||| || |||||||||||||||||| Sbjct 10793159 GCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGA 10793218 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || ||||| ||||| |||| |||| | | ||| || || || || Sbjct 10793219 GAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGG 10793278 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || |||||||| ||| |||| | |||| | ||| | ||||| | | || | Sbjct 10793279 AATCCCCTCTTTGTC-CTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTA 10793337 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | ||| || ||||||| ||| ||||| || || |||||| Sbjct 10793338 CTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||||||| || || | | | || ||||| || |||||||| ||| Sbjct 10794071 GCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 10794130 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| |||||||||||||| | | || | ||||||||| || ||||| Sbjct 10794131 CAAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGG 10794190 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || ||| | | || | || || | | ||| || Sbjct 10794191 GATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAAC 10794250 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || || || || || || ||||| Sbjct 10794251 TTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298 >seq2 Length=15265516 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC 138462 ||||||| || | | | || ||||| || || ||||| ||| | ||||| ||| Sbjct 12970336 AAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCATCC 12970277 Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522 ||||| ||||| |||| |||| ||||| || || ||||| || || || ||||| || Sbjct 12970276 TCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCC 12970217 Query 138523 GTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| | || | ||| | | || | || || | || ||| ||||| | || | || Sbjct 12970216 -TGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGT 12970158 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||||||| ||||| || ||||||||||| Sbjct 12970157 CTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496249484771040