Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4 134 1e-26 seq7 129 4e-25 seq2 91.5 1e-13 >seq4 Length=12290766 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | ||||||||||||||||| || || || || |||||||||||| Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | || || | ||||| || || | |||||||||||||| ||| ||| Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| ||| ||| |||| || || || | || || Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACC 489118 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || ||||||||||| || ||||||||||| Sbjct 489119 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165 >seq7 Length=16482863 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||| | | || || || || ||||| || |||||||| || ||||| ||| Sbjct 10793614 TGCCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGG 10793673 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | ||||||| | |||||| |||||| | ||||| | |||||||| || Sbjct 10793674 AAAGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTG 10793733 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| || ||| | || || ||||| | ||| | Sbjct 10793734 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGA 10793793 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || ||||| ||||| || || ||||| ||||| || ||||||||||| Sbjct 10793794 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCAT 10793842 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || | |||||| ||||| || || || || || || || || |||||||| || Sbjct 10794300 CCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAC 10794359 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||||| | ||||||||||||| | |||||||| || ||||| || Sbjct 10794360 AAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 10794419 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || || ||| || |||| || |||||| || || Sbjct 10794420 ATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACC 10794479 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||||||||| |||| ||| || || || || ||||| Sbjct 10794480 TCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||| | | || || || || || || || || || || || ||||||||| Sbjct 10792930 TGCCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGG 10792989 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | ||||||||| |||||| ||||| | ||||| | |||||||| || Sbjct 10792990 AAAGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTG 10793049 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || || ||||| ||| || || || | || || ||||| | ||| | Sbjct 10793050 GGATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGA 10793109 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| |||||||| || ||||||||||| || ||||||||||| Sbjct 10793110 CTTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| ||| | || || || |||||||| || || || || ||||||||||| Sbjct 10793842 TGCCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTG 10793901 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | | ||||||| |||||| || || | ||||| | |||||||| || Sbjct 10793902 AGAGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTG 10793961 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || |||||||| || ||| || || || |||| || || ||| | ||| | Sbjct 10793962 GGATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGA 10794021 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||||||||| || |||| || || || || || ||||| Sbjct 10794022 CTTCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCAT 10794070 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 ||||| || |||||||| || || || || |||||||||||| || || || ||| Sbjct 10794087 AAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCG--GACAAGGTGCGTCCGT 10794144 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| | |||||| |||||| | |||||||||||||| || || || || ||||||| Sbjct 10794145 CTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTTGT 10794204 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | || ||| ||| || | || || ||||| || || || | || |||| Sbjct 10794205 CCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATGG 10794264 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || || || || || ||||||||| Sbjct 10794265 TCTTGCCAGTGAGTGTCTTAACGAAGATTTGCATA 10794299 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||||| | || |||||||| ||||| || |||||||| || || || || Sbjct 10792704 CCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGAC 10792763 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | | ||||| | |||||||||||| | ||||| | ||| || || ||| Sbjct 10792764 AGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 10792823 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || ||||| ||| ||| | || || || || |||||| Sbjct 10792824 ATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACT 10792883 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || || |||| || || || ||||||||||| Sbjct 10792884 TCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||| |||| |||||| || || || ||||| || ||||| || || | | | || Sbjct 10792490 TAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATC 10792549 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| || ||||| || || | ||||| | || ||||| ||||| |||||||| || Sbjct 10792550 TTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGGAATACCTTCCTTATC 10792609 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTT-TCTACGTCTAAGGTAATGG 15142 ||||||| || ||| |||| || || || | || || || || || ||||| | Sbjct 10792610 TTGAATTTTGGCCTTCACATTTTCAATCGTGTC-CGATGGCTCAACTTCCAACGTAATTG 10792668 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| || |||| || || || |||||||||||| Sbjct 10792669 TTTTCCCAGTCAACGTCTTCACGAAAATTTGCATA 10792703 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || || || ||||| || ||||| || |||||||| ||| Sbjct 10793386 TGCCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGG 10793445 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | || || || |||||||| ||| | ||||| | || || || | Sbjct 10793446 AGAGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGG 10793505 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| || || ||||| |||||| || || |||| || || || | ||| | Sbjct 10793506 GAATCCCCTCTTTGTCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGA 10793565 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || || ||||| || |||| ||| || || ||||||||||| Sbjct 10793566 CTTCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614 >seq2 Length=15265516 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||||| | ||||||||||| |||||||| || || || || || ||||||||| Sbjct 12970352 GCCACCTCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGA 12970293 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | | | || || | ||||| || ||| | || | ||| || || || || Sbjct 12970292 GAGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGG 12970233 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| || || || || ||| || ||| ||| | || |||||||| || || Sbjct 12970232 AATCCCCTCTTTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGAC 12970173 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || ||||| ||||| || ||||| ||||| Sbjct 12970172 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357382931401370