Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_011588.1 Length=127615 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 >seq1 Length=8676460 Score = 96.9 bits (106), Expect = 3e-15 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 69543 tttttCTTTTACCGAGAAGTGGCCGTCGAGCATATTAACTGCGGAAAGACCATTTATTCG 69602 || ||||| ||||| ||| ||||||||| | || ||||||||||| ||| || ||| Sbjct 2848887 TTCTTCTTCTACCGTGAAACCGCCGTCGAGTACATGAACTGCGGAAAAGTCATCTACTCG 2848946 Query 69603 AGAGTCGCTCGTGTCTGCAAAAATGATCACGGCGGCCCACATCGGTACTCG-GATAAATG 69661 | ||||| | || ||||| | || | || ||||| || | || | || || || Sbjct 2848947 CGGGTCGCCAGGGTGTGCAAGGACGACAAAGGGGGCCCTCACCAGT-CACGCGACCGCTG 2849005 Query 69662 GACGTCATTTTTAAAGACTCGACTAAATTGTTCGGTGCCCGGCGAATTCCCCTTTTACTT 69721 |||||| || | || | || || |||||||| | |||||||| | |||||||||||| Sbjct 2849006 GACGTCGTTCCTCAAAGCACGTCTCAATTGTTCAATTCCCGGCGAGTACCCCTTTTACTT 2849065 Query 69722 TGACGAA 69728 ||| ||| Sbjct 2849066 TGATGAA 2849072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408232841083952