Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq4 143 3e-29
seq7 136 4e-27
seq5 89.7 5e-13
seq2 84.2 2e-11
>seq4
Length=12290766
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| || ||||| | || || || || || || ||||||||| |
Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || |||||||| || || | ||||| ||||| |||||||| ||
Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||| ||||||||| |||||| |||| | ||||| |||||| | | ||||||
Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACC 489118
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || ||||||||||||||||| || ||||| |||||
Sbjct 489119 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
Score = 100 bits (110), Expect = 3e-16
Identities = 121/162 (75%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 146617 TTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCT-TGTC 146675
|| ||| || |||| |||||||| |||||||||||||| ||||| | ||||| ||
Sbjct 1758742 TTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCGGGTGAT 1758683
Query 146676 GCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttG 146735
| || ||| || || || | ||| | ||||||| | |||| |||| ||||||| |||
Sbjct 1758682 GTAA-ACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTTTGTTG 1758624
Query 146736 GTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777
||| || | |||| || | ||| |||||||||||||| ||
Sbjct 1758623 GTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGG 1758582
>seq7
Length=16482863
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||||||||| || | || |||||||| || || ||||| |||
Sbjct 10793388 CCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 10793447
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| || | |||||| || ||| | ||||||| |||||||| || ||
Sbjct 10793448 AGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGA 10793507
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| ||||| |||||| |||||| ||| | | ||||| ||||||| | ||||||
Sbjct 10793508 ATCCCCTCTTTGTCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACT 10793567
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | || | |||||| || |||| ||| || || ||||| ||||||
Sbjct 10793568 TCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| || || || | || || ||||||||||| ||||| |||
Sbjct 10793160 CCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAG 10793219
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || |||||||| || ||| ||||||| | ||||||||| || ||
Sbjct 10793220 AGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGA 10793279
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| ||||| |||||| |||||| ||| | | ||||| ||||||| || |||
Sbjct 10793280 ATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACT 10793339
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | || | ||| || || |||| ||| ||||| || || ||||||
Sbjct 10793340 TCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||||||||| || | || || || || || ||||||||||||
Sbjct 10792932 CCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 10792991
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || ||||| ||||||||||| ||||||||| || || || || ||
Sbjct 10792992 AGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793051
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| ||||| ||||| || || ||||| | || | || || | | ||||||
Sbjct 10793052 ATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGACT 10793111
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | |||||||| ||||||||||| || ||||| ||||||
Sbjct 10793112 TCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCATG 10793159
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||||||||| || | || || |||||||| |||||||| |||
Sbjct 10793616 CCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAA 10793675
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || || |||||||||||| ||||||||| || || || || ||
Sbjct 10793676 AGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGG 10793735
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| || |||||||| ||| || ||| | | || | ||| || | | |||||
Sbjct 10793736 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACC 10793795
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || ||||| ||||| ||||| || ||||| ||||||
Sbjct 10793796 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCATG 10793843
Score = 102 bits (112), Expect = 8e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
||||| || ||||||| || || |||||||||||||| || || || ||||| |
Sbjct 10792716 CGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCA 10792775
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || || ||||| ||||| ||||||| | ||||||||| ||||| ||||| || ||
Sbjct 10792776 TCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTA 10792835
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| |||||| || | | || | ||||| | || ||||| | || | |
Sbjct 10792836 TCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATC 10792895
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| || || |||| || || || ||||| ||||||
Sbjct 10792896 GTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
||||| ||||| || | || || || || || || ||||||||| || |||||
Sbjct 10794084 CGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCG 10794143
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || || ||||| |||||| | ||||| ||||| ||||| ||||| ||||||||||||
Sbjct 10794144 TCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTTG 10794203
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || |||| | |||| || || | ||| ||||| | || |
Sbjct 10794204 TCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATG 10794263
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||| || || || || || || || |||||
Sbjct 10794264 GTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298
>seq5
Length=15459558
Score = 89.7 bits (98), Expect = 5e-13
Identities = 162/235 (69%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 47059 TCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACG 47118
|||||| ||||||| || | |||||||| |||||| || || || | | |
Sbjct 2624538 TCGAGACGCTGCCCTGTGTTAAGAAGAAGGCCGACTGGGCCTTGCTGTGGATAAACAGCA 2624597
Query 47119 AAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCT 47178
| |||| ||| | | |||||| | | || || ||| |||||| || | |||||||
Sbjct 2624598 AGAACGCGACTTTTGGCGAACGAATCGTGGCGTTTGCCGCCGTCGAAGGGATTTTCTTCT 2624657
Query 47179 CGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGA--GTTATGCCCGGCCTCAC 47236
| ||||||||||| |||| || | | |||| | ||| ||||||| || |||||
Sbjct 2624658 CTGGCAGCTTTGCTTCGATTTTCTGGCTTAAAA--AGCGGAATCTTATGCCAGGTCTCAC 2624715
Query 47237 GTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGT 47291
||| ||| || || || ||||| ||||| ||||| || | | |||||||||
Sbjct 2624716 ATTTTCCAATGAACTGATTTCGAGGGACGAGGGCCTACATTGCGATTTTGCCTGT 2624770
>seq2
Length=15265516
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || || || |||||||||||| | || || ||| || |||||||| ||
Sbjct 12970321 GTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCATCCTCGAGCTGTTTCCCG 12970262
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035
||| |||| | || |||||||| || || || ||||| || ||| ||| | | || ||
Sbjct 12970261 GCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCC-TGAATCTTAGCTTT 12970203
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| | |||| || || | |||||| || | ||| | || ||||| ||||| ||
Sbjct 12970202 CACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 12970143
Query 127096 TTTTACAAAAATCTGCAT 127113
||| || |||||||||||
Sbjct 12970142 TTTAACGAAAATCTGCAT 12970125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475488425091680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |