Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq3 95.1 1e-14
seq5 91.5 2e-13
>seq3
Length=31381287
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/194 (72%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 10697 AGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATG 10756
||| | ||||||| || ||||| || | || | |||||||| || ||||||||||| |
Sbjct 28596940 AGTGCCTTGAATTAGGCAACCTGGACTCGAAGCGCGACTGGGGCCATGCCAAGGACTACG 28596881
Query 10757 TTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGG 10816
| || |||||||||||| | || || || ||| ||||||| | ||| | || | |
Sbjct 28596880 TGGAGGCCATGTGGCTCATGCTGCAGCAGCCCGAGCCGGACGACTTCGTCATAGCTTCCG 28596821
Query 10817 GGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTTT-AGGGAAGTTGGAAAGGTG 10875
||||||| ||| || ||||||| |||||| | ||||| || | || || |||| |
Sbjct 28596820 GGGAGACGCACAGTGTGCGGGAGTTTGTTGAGGCG-GCTTTCAGACACGTGGGGAAGGAG 28596762
Query 10876 GTCACATGGGAAGG 10889
| ||||||||
Sbjct 28596761 ATTCTGTGGGAAGG 28596748
Score = 86.0 bits (94), Expect = 8e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935
|| |||||||| ||||||||||| || | |||||| || | || ||||| |
Sbjct 29987348 CCCACGGCGTCGATTTCGTCAATAAACAGGATACAAGGAGCGTGTTTGCGGGCCATGGAG 29987289
Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995
|||| || || || | | ||| ||||| || ||||| |||| || | || ||
Sbjct 29987288 AAGAGGTCGCGTACACGGGATGGACCCACACCTACGAACATTTCCAGGAATTCGGACCCG 29987229
Query 12996 GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 13055
||| | |||||| |||||||||| |||||| ||| |||| ||| |||||||| ||
Sbjct 29987228 GAAACTGTGATGAACGGGACGTTGGCTTCACCTGCGGTGGCCTTGGCTAGGAGGGTTTTA 29987169
Query 13056 CCCGTCCCTGGT 13067
|| || || |||
Sbjct 29987168 CCGGTGCCAGGT 29987157
Score = 82.4 bits (90), Expect = 9e-11
Identities = 148/211 (70%), Gaps = 8/211 (4%)
Strand=Plus/Minus
Query 175898 TTTGTGAAGATGTACCTCGTTTGA--GACGCA-TCTTTGCCACCCATGAGACGCGTCCCA 175954
|||||||| ||||| |||| || | ||| ||||| || ||| | ||||| ||
Sbjct 21014045 TTTGTGAAAATGTATCTCG---GACTGGCGCTGTCTTTCCCTCCCGCCATCCGCGTACCG 21013989
Query 175955 AATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAAC 176014
|| ||||| | ||||| | | ||| ||||| || || | | | | | |||||
Sbjct 21013988 AACTGACCTCTCGGCTCCAACAAATTAATATTATTGCTACCGACAAAATTTTGAGCCAAG 21013929
Query 176015 TTGACAATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCAC 176073
|| || || || || | ||||| ||||| ||||||||||| |||||| | || |||||
Sbjct 21013928 TTAACGATTGTCATACAA-AGGGACACTTCGCCGTGATGGTACGCCGACATTTCAGCCAC 21013870
Query 176074 ATACGCCGCCAACTGCGCCACCTTCATCTCA 176104
| | |||||||||| ||||| || | ||||
Sbjct 21013869 AGAACCCGCCAACTGGGCCACTTTTACCTCA 21013839
>seq5
Length=15459558
Score = 91.5 bits (100), Expect = 2e-13
Identities = 166/241 (69%), Gaps = 3/241 (1%)
Strand=Plus/Minus
Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591
|| || |||||||| | || || |||||||| || || ||||||||||| ||| |
Sbjct 2624754 TGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAAGATTC 2624695
Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651
||||| || | ||||||||||| | ||| |||||||||||| ||||| || ||
Sbjct 2624694 CGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGACGGCG 2624635
Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711
|| ||||| | | || ||| |||| | | ||| | | | |||| || |||
Sbjct 2624634 GCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCCACAGCAAGGCC 2624575
Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC-TTCA--AAGAGTTCCTTC 127768
|| | ||||| |||| | ||| || | |||| |||||| || | |||| ||||||
Sbjct 2624574 CAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAACTCCTTC 2624515
Query 127769 T 127769
|
Sbjct 2624514 T 2624514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613491233475120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |