Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 seq5 91.5 2e-13 >seq3 Length=31381287 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 10697 AGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATG 10756 ||| | ||||||| || ||||| || | || | |||||||| || ||||||||||| | Sbjct 28596940 AGTGCCTTGAATTAGGCAACCTGGACTCGAAGCGCGACTGGGGCCATGCCAAGGACTACG 28596881 Query 10757 TTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGG 10816 | || |||||||||||| | || || || ||| ||||||| | ||| | || | | Sbjct 28596880 TGGAGGCCATGTGGCTCATGCTGCAGCAGCCCGAGCCGGACGACTTCGTCATAGCTTCCG 28596821 Query 10817 GGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTTT-AGGGAAGTTGGAAAGGTG 10875 ||||||| ||| || ||||||| |||||| | ||||| || | || || |||| | Sbjct 28596820 GGGAGACGCACAGTGTGCGGGAGTTTGTTGAGGCG-GCTTTCAGACACGTGGGGAAGGAG 28596762 Query 10876 GTCACATGGGAAGG 10889 | |||||||| Sbjct 28596761 ATTCTGTGGGAAGG 28596748 Score = 86.0 bits (94), Expect = 8e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 || |||||||| ||||||||||| || | |||||| || | || ||||| | Sbjct 29987348 CCCACGGCGTCGATTTCGTCAATAAACAGGATACAAGGAGCGTGTTTGCGGGCCATGGAG 29987289 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 |||| || || || | | ||| ||||| || ||||| |||| || | || || Sbjct 29987288 AAGAGGTCGCGTACACGGGATGGACCCACACCTACGAACATTTCCAGGAATTCGGACCCG 29987229 Query 12996 GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 13055 ||| | |||||| |||||||||| |||||| ||| |||| ||| |||||||| || Sbjct 29987228 GAAACTGTGATGAACGGGACGTTGGCTTCACCTGCGGTGGCCTTGGCTAGGAGGGTTTTA 29987169 Query 13056 CCCGTCCCTGGT 13067 || || || ||| Sbjct 29987168 CCGGTGCCAGGT 29987157 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/211 (70%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 175898 TTTGTGAAGATGTACCTCGTTTGA--GACGCA-TCTTTGCCACCCATGAGACGCGTCCCA 175954 |||||||| ||||| |||| || | ||| ||||| || ||| | ||||| || Sbjct 21014045 TTTGTGAAAATGTATCTCG---GACTGGCGCTGTCTTTCCCTCCCGCCATCCGCGTACCG 21013989 Query 175955 AATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAAC 176014 || ||||| | ||||| | | ||| ||||| || || | | | | | ||||| Sbjct 21013988 AACTGACCTCTCGGCTCCAACAAATTAATATTATTGCTACCGACAAAATTTTGAGCCAAG 21013929 Query 176015 TTGACAATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCAC 176073 || || || || || | ||||| ||||| ||||||||||| |||||| | || ||||| Sbjct 21013928 TTAACGATTGTCATACAA-AGGGACACTTCGCCGTGATGGTACGCCGACATTTCAGCCAC 21013870 Query 176074 ATACGCCGCCAACTGCGCCACCTTCATCTCA 176104 | | |||||||||| ||||| || | |||| Sbjct 21013869 AGAACCCGCCAACTGGGCCACTTTTACCTCA 21013839 >seq5 Length=15459558 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/241 (69%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || |||||||| | || || |||||||| || || ||||||||||| ||| | Sbjct 2624754 TGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAAGATTC 2624695 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 ||||| || | ||||||||||| | ||| |||||||||||| ||||| || || Sbjct 2624694 CGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGACGGCG 2624635 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || ||||| | | || ||| |||| | | ||| | | | |||| || ||| Sbjct 2624634 GCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCCACAGCAAGGCC 2624575 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC-TTCA--AAGAGTTCCTTC 127768 || | ||||| |||| | ||| || | |||| |||||| || | |||| |||||| Sbjct 2624574 CAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAACTCCTTC 2624515 Query 127769 T 127769 | Sbjct 2624514 T 2624514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613491233475120