Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 152 8e-32 seq5 129 9e-25 >seq4 Length=12290766 Score = 152 bits (168), Expect = 8e-32 Identities = 516/784 (66%), Gaps = 30/784 (4%) Strand=Plus/Minus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 || ||||| ||||| ||||||| || |||| || | | || | ||||||||| || Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA-CGTTGGG 203958 ||||||| ||||| | ||||||||| | ||||||||||||| | | || || || Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACA-TGACCCCATAATTCGG 1759521 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 | | || || ||||| |||| ||||| || ||||| || ||| ||||| | ||| || | Sbjct 1759520 GGCCGCAATATGAATATTCATCGACTGACTCTGGTCAAT-AAACGCGCCTCTATCAGCCG 1759462 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||||| ||||| ||||||||||||||||| || || || ||| | | | | Sbjct 1759461 CCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAAAT 1759402 Query 204078 GTTGAGGCACATCTTCCC---ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCA-T 204132 | || | | ||| | || || ||||| || | | || || | ||| | | Sbjct 1759401 CGTCGGGAA----TCCCCGGAATGTTTTGAATCGAACCATAATTCGCAAT-AATCTGATT 1759347 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGA-TCAGCTCCCGCACCAGGTGGGGGTTGA 204191 | || || || |||| | |||| || | ||| ||| || |||||| | || | Sbjct 1759346 CTTCATCGTATCGTCCCA-AAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCA 1759288 Query 204192 TGATCTGAAAGTCTCCGGACAGCACC--CCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 || ||||| || || |||| |||| |||| | | | || ||| | ||||| Sbjct 1759287 CGACTTGAAACTCCCCAGACAACACCCGCCTCACAT--AGATATTAGAAGTGTACGGTTC 1759230 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 | || || || || || ||||| || || || ||||||||||| ||||||| || Sbjct 1759229 GGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAG 1759170 Query 204310 CAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCAT 204369 || || ||||| ||||||||||| || | |||| | || ||| || || Sbjct 1759169 TAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAA 1759110 Query 204370 CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTG-C 204428 | || | ||||||||||||||| |||| |||| ||||||||||| || || | Sbjct 1759109 ATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGG--TGAC 1759052 Query 204429 CCTT-GTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCG 204487 |||| || ||| ||| || | || ||| ||||| | ||| || ||| |||| Sbjct 1759051 CCTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCG 1758992 Query 204488 TGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC---GGCCTCCGTTCCGTCA 204544 || || | || || || || || ||||| ||| ||||||| | ||| Sbjct 1758991 CCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTA---GGGCTTTAGCCTCCGGGCTATCA 1758935 Query 204545 AACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGGT 204604 || | || | ||| | ||| | || |||| |||||| || || ||||||| ||| Sbjct 1758934 AAAGGCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGC 1758875 Query 204605 CTGT 204608 |||| Sbjct 1758874 CTGT 1758871 >seq5 Length=15459558 Score = 129 bits (142), Expect = 9e-25 Identities = 372/562 (66%), Gaps = 19/562 (3%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||||| | ||| |||||||| || || || |||||||| || |||| || | Sbjct 2625061 CTTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAAT--A 2625004 Query 159688 TTC--CATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCC 159745 || |||||| |||| || |||| || ||| ||| | || | | || Sbjct 2625003 ATCGTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCC 2624944 Query 159746 AGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGC 159805 | ||| ||||| ||||||||||||||||| |||||| | ||||| || || | | Sbjct 2624943 AACAATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATC 2624884 Query 159806 AGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACA 159865 | || || || | ||||| | || || |||||||| || | |||||| || | | Sbjct 2624883 ATGCTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCTTGGATA 2624824 Query 159866 AT-CTGCGAGACACGTTCGTACCCCGGCTT--GCCCAAAATGTGGTCCTTAAACAGGAGG 159922 || || || | ||||| | |||||| || | || || | |||| | Sbjct 2624823 ATGCTTTGAATC-CGTTCTTTGGACGGCTTCTGCACCAAGTGAGAG-----AACATCAAA 2624770 Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || ||||| ||||| || || |||||||||| || || | || ||||| | |||| Sbjct 2624769 CAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGA 2624710 Query 159983 CCCGGCAT--GATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAA 160040 || ||||| ||| || || ||| ||||| ||||| | ||||| || || | Sbjct 2624709 CCTGGCATAAGATTCC--GCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGA 2624652 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCAT 160100 | ||||| || ||||| ||||||||||||| | || ||||||| ||||| || | Sbjct 2624651 AAATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGT 2624592 Query 160101 GGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCG-CTCGACGGCG 160159 ||||| |||||| || |||||||| | || |||| ||| ||||| || Sbjct 2624591 TTATCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCA-GCGTCTCGATCGCA 2624533 Query 160160 TTAAACAATCTGTCCTGCTCCT 160181 || ||||| |||| ||||| Sbjct 2624532 TTGAACAAGAACTCCTTCTCCT 2624511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795134506085920