Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7 129 1e-24 seq4 122 2e-22 seq2 113 1e-19 >seq7 Length=16482863 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || || | |||||| || || || ||||| | ||||||||| | | ||| Sbjct 10793165 TCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGT 10793224 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| ||||| || ||||||||||| | | |||||| || || ||| || Sbjct 10793225 TCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCC 10793284 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| || ||| ||| ||||| ||||| | || |||||| ||||| Sbjct 10793285 CTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACTTCCAA 10793344 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || | ||| || || || ||||| Sbjct 10793345 AGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTG 10793383 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | |||||| ||||| ||||| |||| ||||||||||| |||||| | ||| Sbjct 10794311 TCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCC 10794370 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| || || || || |||||||| | ||| |||||||| || || ||||| Sbjct 10794371 GTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTT 10794430 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| ||||| || ||| ||||| ||| || | | || || ||||| ||||| Sbjct 10794431 GTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGTGAT 10794490 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || | ||| ||||| || || || Sbjct 10794491 GGTTTTACCAGTCAAAGTCTTCACGAAGATCTG 10794523 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || ||||| | || ||||| | || || | |||||||| || || Sbjct 10792728 TGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCTTCGAGTTGT 10792787 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| | | |||||| || ||| ||| |||||| ||||| || ||| Sbjct 10792788 TTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCCTGGAT-TTT 10792846 Query 199547 TGCTTCACGGAT-TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||| | | || | ||||||| | |||||| ||||| ||||||||||| ||||| Sbjct 10792847 AGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGTCTTTCCCGT 10792906 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || ||||| |||||||| Sbjct 10792907 CAAGGTCTTCACGAAAATTTG 10792927 >seq4 Length=12290766 Score = 122 bits (134), Expect = 2e-22 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || ||||| |||| |||||| || | |||||| | |||||| |||||||| Sbjct 488963 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGT 489022 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || || || | |||||| || || || ||| ||||| |||||||| ||| Sbjct 489023 TTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTGAAT-TTT 489081 Query 199547 TGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||| || ||||| |||||||| | || || || | ||||| ||||| || || Sbjct 489082 CGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGT 489141 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| Sbjct 489142 CAGAGTTTTCACGAAAATTTG 489162 >seq2 Length=15265516 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| | || ||||| || || || ||||| |||| ||||| || | | || | | Sbjct 12970342 AGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGT 12970283 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| || ||||| || ||||||||||||||||| ||||| ||||| ||| || ||| Sbjct 12970282 CCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCT 12970223 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| ||||| |||| || |||| | || || || | ||| Sbjct 12970222 TTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTG 12970163 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || ||||| || ||||| || Sbjct 12970162 ATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTG 12970128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178890151529494