Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq7 120 3e-22
seq2 86.0 7e-12
>seq7
Length=16482863
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| || | |||||| |||| || | || ||||| ||||| ||||| ||||
Sbjct 10794070 TGCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGG 10794129
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| | ||||| |||| ||||| || || || ||||| ||||| ||||| || || | |
Sbjct 10794130 ACAAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAG 10794189
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || |||||||||| |||||| |||| || | | ||| || | || |
Sbjct 10794190 GGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAA 10794249
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| |||||||| ||||| || || || ||||| |||||||||||
Sbjct 10794250 CTTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298
Score = 111 bits (122), Expect = 2e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| |||| | ||||||||||| || | || ||||| ||||||||||| ||||
Sbjct 10792930 TGCCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGG 10792989
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| ||||| || |||| || || || || || || || ||||| | || ||||| | |
Sbjct 10792990 AAAGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTG 10793049
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | ||| ||||| ||||| ||||| || | | || || | ||| |
Sbjct 10793050 GGATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGA 10793109
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| |||||||||||||| ||||| |||||||| || ||||||||
Sbjct 10793110 CTTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158
Score = 111 bits (122), Expect = 2e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| |||| | ||||||||||| || | || || |||||||||||||||||||
Sbjct 10793614 TGCCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGG 10793673
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| ||||| || |||| || || || || || ||||| ||||| | || ||||| | |
Sbjct 10793674 AAAGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTG 10793733
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | |||||||| |||||| ||| | || | | || || | ||| |
Sbjct 10793734 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGA 10793793
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| |||||||| ||||| ||||| ||||| || || ||||||||
Sbjct 10793794 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCAT 10793842
Score = 102 bits (112), Expect = 9e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||| || | |||||| |||| ||||| || ||||| |||||
Sbjct 10794336 TCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAG 10794395
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| || |||||||| | || | | ||||||||| |||||| |||| |
Sbjct 10794396 ATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTT 10794455
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | || ||| | || || |||| ||||||||||| || |||| || || ||
Sbjct 10794456 TCGATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACG 10794515
Query 46583 AAGATTTGCAT 46593
||||| |||||
Sbjct 10794516 AAGATCTGCAT 10794526
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| |||| | ||||| || | || | ||| || ||||| || ||||||||||
Sbjct 10793158 TGCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 10793217
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| ||||| || | || |||||||| ||||||||||| ||||| | |||||| || | |
Sbjct 10793218 AGAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGG 10793277
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | ||| |||||| || ||| ||| | | | | ||||| | ||| |
Sbjct 10793278 GAATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTA 10793337
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| ||||| || || || |||| || || || |||||||||||
Sbjct 10793338 CTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386
Score = 89.7 bits (98), Expect = 6e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | | ||||||||||| || | || ||| || ||||| ||||||||||
Sbjct 10793386 TGCCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGG 10793445
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || ||||| | || || | ||| ||||||||||| ||||| | ||||| || | |
Sbjct 10793446 AGAGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGG 10793505
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | ||| |||||| || ||| ||| | | | | ||||| | ||| |
Sbjct 10793506 GAATCCCCTCTTTGTCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGA 10793565
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || | ||||| ||||| || |||| || || || || ||||||||
Sbjct 10793566 CTTCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614
>seq2
Length=15265516
Score = 86.0 bits (94), Expect = 7e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||||||||| ||||| || || || | || |||||||| || ||||||||
Sbjct 12970315 TCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAG 12970256
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | || ||||| || | || | | ||| || ||| ||||| || | ||
Sbjct 12970255 ATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCCTGAATCTTAGCTTTCACATTC 12970196
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | || || || || || || | |||||||| ||||| ||||| ||||||||
Sbjct 12970195 TCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACG 12970136
Query 46583 AAGATTTGCATTTTG 46597
|| || |||||| ||
Sbjct 12970135 AAAATCTGCATTGTG 12970121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565223689670640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |