Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq5 365 4e-96
seq4 143 3e-29
seq7 134 1e-26
>seq5
Length=15459558
Score = 365 bits (404), Expect = 4e-96
Identities = 643/930 (69%), Gaps = 15/930 (2%)
Strand=Plus/Minus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
|| || ||||| ||||| || |||||||| ||||| || || || || |||||| | |
Sbjct 2625060 TTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATC 2625001
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGC 132723
||||| ||||| || || || || ||||||| || || || ||| | | |
Sbjct 2625000 GTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCCAAC 2624941
Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783
| ||||||||||| || ||||||||||| |||| |||| || | ||| | ||
Sbjct 2624940 AATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATG 2624881
Query 132784 CGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTC---GGTGAC 132839
| || || | ||||| || | ||| | || |||||| ||||||||| | | |
Sbjct 2624880 CTGACTGGTAAAGCTTCAGTCAAGAATTCCTT-CTCGATTTTGACCGCGTCTTGGATAAT 2624822
Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899
| ||| || || | | |||| |||||||| || ||||||||| || ||
Sbjct 2624821 GCTTTG---AATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGC 2624765
Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959
||| |||||||| | |||||||||||| ||||| ||||| ||| || || | || ||
Sbjct 2624764 AAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGG 2624705
Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019
||| || || ||||| ||||| || || | || || ||||| || ||||| | ||
Sbjct 2624704 CATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCC 2624645
Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCA 133079
|||||||| || || ||||| | || ||||| || || || | |||||| |||||
Sbjct 2624644 TTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCCA 2624585
Query 133080 GCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139
||| ||||| |||||||| | || || || |||| ||| ||||| || || |||||
Sbjct 2624584 CAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAA 2624525
Query 133140 ACGGAGTTTCTCTTCCGAGGAACGCAC--GTAGGTGTCGATGAGGGTCGAATACATTTCC 133197
| | | ||| | | || | | ||| || ||||| | | ||||| |||
Sbjct 2624524 --GAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCC 2624467
Query 133198 GAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGC 133257
|| || | ||| || || |||||||| || ||||||||||| || || ||| ||| |||
Sbjct 2624466 GAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGC 2624407
Query 133258 ACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAA 133317
|| || || ||| | |||||| || |||||||||||||| ||||| ||| ||||||
Sbjct 2624406 ACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAA 2624347
Query 133318 AAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCG 133374
|| || || |||||| ||||| | ||| || | |||| | || |||||||
Sbjct 2624346 AATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCG 2624287
Query 133375 CGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTG 133434
| || || |||| || || || ||| ||||||||||| || || |||| |||
Sbjct 2624286 TCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTG 2624227
Query 133435 TACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCG 133494
|| | ||| ||||| | || || |||||||| | |||||||||||| ||||||||
Sbjct 2624226 TATTTGTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAACCGGCGCGGGTTTTCC 2624167
Query 133495 CGCAACAGCGGCTCCGCTTGGGGGTCGAAC 133524
||| || |||||| || ||||||||||
Sbjct 2624166 TGCAGAAGGGGCTCCAATTCGGGGTCGAAC 2624137
>seq4
Length=12290766
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| ||||| || || ||||| |||||||| | || |||||| | |
Sbjct 489165 ATGCAAATTTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCA 489106
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | ||| | |||| ||||| | ||||| || || |||||| |||| |||
Sbjct 489105 GACACCATCGAAAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCCGATCAA 489046
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | |||| ||||| ||||||||||| || | ||||| | ||| ||||||
Sbjct 489045 CAGCGTTTGATTTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 488986
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| |||||| | || || ||||| || ||||| || |||| ||
Sbjct 488985 ATCCAGAAGGAATCCACCCTTCATTTAGTTTTGCGTCTGCGAGGTGG 488939
>seq7
Length=16482863
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || || |||||||||||| | || |||||| || ||
Sbjct 10794526 ATGCAGATCTTCGTGAAGACTTTGACTGGTAAAACCATCACCTTGGAGGTCGAGCCCTCC 10794467
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | ||||| | |||| || |||| ||||| || || || ||| | |||||
Sbjct 10794466 GATACCATCGAAAACG-TCAAAGCTAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCA 10794408
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| || | || | ||| |||||||| || || |||| ||||| | ||||||||
Sbjct 10794407 GCAACGTTTGATCTTCGCTGGCAAACAACTCGAAGACGGACGCACTTTGTCTGACTACAA 10794348
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| |||||| ||||||| || ||||| || | ||||| |||||
Sbjct 10794347 CATCCAGAAGGAATCGACGCTCCACTTGGTTTTGAGATTGAGGGGCGG 10794300
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| ||||| |||||||| | || || ||| || |
Sbjct 10794298 ATGCAAATCTTCGTTAAGACACTCACTGGCAAGACCATCACTCTGGAAGTTGAGCCCTCT 10794239
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | |||| | |||| || |||| ||||| ||||| || || | || ||
Sbjct 10794238 GATACGATCGAGAACG-TCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCA 10794180
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| | |||| ||| || ||||| || || |||| |||||| | ||| |||||
Sbjct 10794179 ACAGCGTTTGATTTTCGCTGGTAAACAACTCGAAGACGGACGCACCTTGTCCGATTACAA 10794120
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| |||||| | || || || ||||| ||||| |||| || |||
Sbjct 10794119 CATCCAGAAGGAATCCACCCTTCACTTGGTTTTGCGTCTGAGGGGAGGC 10794071
Score = 118 bits (130), Expect = 1e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || || ||||| ||||| | || ||||| | |
Sbjct 10793614 ATGCAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCG 10793555
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | ||||| | || | ||||| | ||||||||||| |||||| | || ||
Sbjct 10793554 GACACAATCGAAAACG-TGAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCA 10793496
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| | | |||| ||| ||||||||| |||| || | ||||| ||| |||||||||
Sbjct 10793495 GCAAAGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCTCCGACTACAA 10793436
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||| || || |||| || || |||||| |||||
Sbjct 10793435 CATCCAGAAAGAGTCGACCCTCCACTTGGTGTTGCGT 10793399
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| |||||||| || | || || || || ||||| | || || || | |
Sbjct 10793386 ATGCAAATCTTCGTAAAGACTTTGACTGGGAAGACGATCACTTTGGAAGTAGAACCATCG 10793327
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | ||||| |||| | ||||| | ||||||||||| |||||| | || ||
Sbjct 10793326 GACACTATCGAAAACG-TTAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCA 10793268
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | || | ||| ||||||||||| || || | || || ||| |||||||||
Sbjct 10793267 GCAGAGGTTGATCTTCGCCGGCAAACAGCTCGAAGATGGCCGAACTCTCTCCGACTACAA 10793208
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||| ||||| ||| | || || || || || |||| | |||| |||
Sbjct 10793207 CATTCAAAAAGAATCAACACTCCACTTAGTATTGCGGCTCCGAGGTGGC 10793159
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| ||||| || || ||||||||||||||| | || ||||| | |
Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | |||| | || | || || | ||||||||||| || || | |||||
Sbjct 10793098 GATACAATTGAGAACG-TCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCA 10793040
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| | | || | || || ||||| || || |||| || || || ||| |||||
Sbjct 10793039 ACAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAA 10792980
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| |||||| | || || || |||||| ||||| | |||| |||
Sbjct 10792979 TATCCAGAAGGAATCCACTCTCCACTTGGTGTTGCGTCTCCGAGGTGGC 10792931
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || || |||||||| || | || ||||| | ||
Sbjct 10794070 ATGCAGATCTTCGTCAAGACCTTGACTGGGAAAACCATTACTTTGGAAGTCGAACCTTCC 10794011
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || ||||| | || | || || | || || || || || || | |||||
Sbjct 10794010 GACACGATTGAAAACG-TCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCACCAGACCA 10793952
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| | | || | || || ||||| || || || | ||| |||||| || |||||
Sbjct 10793951 ACAAAGATTGATCTTTGCCGGGAAACAACTAGAAGATGGGCGTACCCTCTCAGATTACAA 10793892
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| |||||| | || || || ||||| ||||||||||||| |||
Sbjct 10793891 CATCCAGAAGGAATCCACCCTTCACTTGGTATTGCGTTTGAGAGGTGGC 10793843
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || ||| | || || ||||| || || | || || ||| | |
Sbjct 10792702 ATGCAAATTTTCGTGAAGACGTTGACTGGGAAAACAATTACGTTGGAAGTTGAGCCATCG 10792643
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || ||| | | || | ||||| | || || || || |||||| | |||||
Sbjct 10792642 GACACGATTGAAAATG-TGAAGGCCAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCA 10792584
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| | | || | ||||| |||||| |||| || | ||||| || ||||||||
Sbjct 10792583 GCAAAGATTGATCTTTGCGGGAAAACAGTTGGAAGATGGTCGCACACTTTCGGACTACAA 10792524
Query 38423 CATCCAAAAGGAAGCGACGCTGCAT 38447
|||||||||||| | || || |||
Sbjct 10792523 TATCCAAAAGGAATCCACTCTTCAT 10792499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500159783002880
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