Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5 365 4e-96 seq4 143 3e-29 seq7 134 1e-26 >seq5 Length=15459558 Score = 365 bits (404), Expect = 4e-96 Identities = 643/930 (69%), Gaps = 15/930 (2%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || ||||| ||||| || |||||||| ||||| || || || || |||||| | | Sbjct 2625060 TTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTGGAAATAATC 2625001 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGC 132723 ||||| ||||| || || || || ||||||| || || || ||| | | | Sbjct 2625000 GTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAACTCGCCCAAC 2624941 Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783 | ||||||||||| || ||||||||||| |||| |||| || | ||| | || Sbjct 2624940 AATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATTCCAATCATG 2624881 Query 132784 CGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTC---GGTGAC 132839 | || || | ||||| || | ||| | || |||||| ||||||||| | | | Sbjct 2624880 CTGACTGGTAAAGCTTCAGTCAAGAATTCCTT-CTCGATTTTGACCGCGTCTTGGATAAT 2624822 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899 | ||| || || | | |||| |||||||| || ||||||||| || || Sbjct 2624821 GCTTTG---AATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAAACAGGC 2624765 Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959 ||| |||||||| | |||||||||||| ||||| ||||| ||| || || | || || Sbjct 2624764 AAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGG 2624705 Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019 ||| || || ||||| ||||| || || | || || ||||| || ||||| | || Sbjct 2624704 CATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCC 2624645 Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCA 133079 |||||||| || || ||||| | || ||||| || || || | |||||| ||||| Sbjct 2624644 TTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCCA 2624585 Query 133080 GCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 ||| ||||| |||||||| | || || || |||| ||| ||||| || || ||||| Sbjct 2624584 CAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAACAA 2624525 Query 133140 ACGGAGTTTCTCTTCCGAGGAACGCAC--GTAGGTGTCGATGAGGGTCGAATACATTTCC 133197 | | | ||| | | || | | ||| || ||||| | | ||||| ||| Sbjct 2624524 --GAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACATCTCC 2624467 Query 133198 GAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGC 133257 || || | ||| || || |||||||| || ||||||||||| || || ||| ||| ||| Sbjct 2624466 GAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCACTTGC 2624407 Query 133258 ACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAA 133317 || || || ||| | |||||| || |||||||||||||| ||||| ||| |||||| Sbjct 2624406 ACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGCGAAA 2624347 Query 133318 AAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCG 133374 || || || |||||| ||||| | ||| || | |||| | || ||||||| Sbjct 2624346 AATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCAGTCG 2624287 Query 133375 CGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTG 133434 | || || |||| || || || ||| ||||||||||| || || |||| ||| Sbjct 2624286 TCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTGCTTG 2624227 Query 133435 TACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCG 133494 || | ||| ||||| | || || |||||||| | |||||||||||| |||||||| Sbjct 2624226 TATTTGTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAACCGGCGCGGGTTTTCC 2624167 Query 133495 CGCAACAGCGGCTCCGCTTGGGGGTCGAAC 133524 ||| || |||||| || |||||||||| Sbjct 2624166 TGCAGAAGGGGCTCCAATTCGGGGTCGAAC 2624137 >seq4 Length=12290766 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || ||||| |||||||| | || |||||| | | Sbjct 489165 ATGCAAATTTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCA 489106 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| ||||| | ||||| || || |||||| |||| ||| Sbjct 489105 GACACCATCGAAAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCCGATCAA 489046 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||||| ||||||||||| || | ||||| | ||| |||||| Sbjct 489045 CAGCGTTTGATTTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 488986 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || ||||| || ||||| || |||| || Sbjct 488985 ATCCAGAAGGAATCCACCCTTCATTTAGTTTTGCGTCTGCGAGGTGG 488939 >seq7 Length=16482863 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || |||||||||||| | || |||||| || || Sbjct 10794526 ATGCAGATCTTCGTGAAGACTTTGACTGGTAAAACCATCACCTTGGAGGTCGAGCCCTCC 10794467 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | ||||| | |||| || |||| ||||| || || || ||| | ||||| Sbjct 10794466 GATACCATCGAAAACG-TCAAAGCTAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCA 10794408 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| |||||||| || || |||| ||||| | |||||||| Sbjct 10794407 GCAACGTTTGATCTTCGCTGGCAAACAACTCGAAGACGGACGCACTTTGTCTGACTACAA 10794348 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| ||||||| || ||||| || | ||||| ||||| Sbjct 10794347 CATCCAGAAGGAATCGACGCTCCACTTGGTTTTGAGATTGAGGGGCGG 10794300 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| |||||||| | || || ||| || | Sbjct 10794298 ATGCAAATCTTCGTTAAGACACTCACTGGCAAGACCATCACTCTGGAAGTTGAGCCCTCT 10794239 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | |||| || |||| ||||| ||||| || || | || || Sbjct 10794238 GATACGATCGAGAACG-TCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCA 10794180 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | |||| ||| || ||||| || || |||| |||||| | ||| ||||| Sbjct 10794179 ACAGCGTTTGATTTTCGCTGGTAAACAACTCGAAGACGGACGCACCTTGTCCGATTACAA 10794120 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || || || ||||| ||||| |||| || ||| Sbjct 10794119 CATCCAGAAGGAATCCACCCTTCACTTGGTTTTGCGTCTGAGGGGAGGC 10794071 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || ||||| ||||| | || ||||| | | Sbjct 10793614 ATGCAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCG 10793555 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | ||||| | ||||||||||| |||||| | || || Sbjct 10793554 GACACAATCGAAAACG-TGAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCA 10793496 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | | |||| ||| ||||||||| |||| || | ||||| ||| ||||||||| Sbjct 10793495 GCAAAGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCTCCGACTACAA 10793436 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || || |||| || || |||||| ||||| Sbjct 10793435 CATCCAGAAAGAGTCGACCCTCCACTTGGTGTTGCGT 10793399 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || | || || || || ||||| | || || || | | Sbjct 10793386 ATGCAAATCTTCGTAAAGACTTTGACTGGGAAGACGATCACTTTGGAAGTAGAACCATCG 10793327 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| |||| | ||||| | ||||||||||| |||||| | || || Sbjct 10793326 GACACTATCGAAAACG-TTAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCA 10793268 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||||||||| || || | || || ||| ||||||||| Sbjct 10793267 GCAGAGGTTGATCTTCGCCGGCAAACAGCTCGAAGATGGCCGAACTCTCTCCGACTACAA 10793208 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| ||||| ||| | || || || || || |||| | |||| ||| Sbjct 10793207 CATTCAAAAAGAATCAACACTCCACTTAGTATTGCGGCTCCGAGGTGGC 10793159 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || ||||||||||||||| | || ||||| | | Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || | || || | ||||||||||| || || | ||||| Sbjct 10793098 GATACAATTGAGAACG-TCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCA 10793040 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || ||||| || || |||| || || || ||| ||||| Sbjct 10793039 ACAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAA 10792980 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || || |||||| ||||| | |||| ||| Sbjct 10792979 TATCCAGAAGGAATCCACTCTCCACTTGGTGTTGCGTCTCCGAGGTGGC 10792931 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || |||||||| || | || ||||| | || Sbjct 10794070 ATGCAGATCTTCGTCAAGACCTTGACTGGGAAAACCATTACTTTGGAAGTCGAACCTTCC 10794011 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| | || | || || | || || || || || || | ||||| Sbjct 10794010 GACACGATTGAAAACG-TCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCACCAGACCA 10793952 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || ||||| || || || | ||| |||||| || ||||| Sbjct 10793951 ACAAAGATTGATCTTTGCCGGGAAACAACTAGAAGATGGGCGTACCCTCTCAGATTACAA 10793892 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || || || ||||| ||||||||||||| ||| Sbjct 10793891 CATCCAGAAGGAATCCACCCTTCACTTGGTATTGCGTTTGAGAGGTGGC 10793843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||| | || || ||||| || || | || || ||| | | Sbjct 10792702 ATGCAAATTTTCGTGAAGACGTTGACTGGGAAAACAATTACGTTGGAAGTTGAGCCATCG 10792643 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| | | || | ||||| | || || || || |||||| | ||||| Sbjct 10792642 GACACGATTGAAAATG-TGAAGGCCAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCA 10792584 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | | || | ||||| |||||| |||| || | ||||| || |||||||| Sbjct 10792583 GCAAAGATTGATCTTTGCGGGAAAACAGTTGGAAGATGGTCGCACACTTTCGGACTACAA 10792524 Query 38423 CATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||||||| | || || ||| Sbjct 10792523 TATCCAAAAGGAATCCACTCTTCAT 10792499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500159783002880