Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq10 163 1e-34 seq2 152 2e-31 seq8 129 2e-24 seq7 113 2e-19 >seq10 Length=7222678 Score = 163 bits (180), Expect = 1e-34 Identities = 293/424 (69%), Gaps = 7/424 (2%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || || ||| | || |||| | || ||||| ||| |||| ||||| ||||||||| Sbjct 5929059 GGCAAACCCAAAATCAAAGTCGAATACAAAGGCGAATCTAAGACTTTCTATCCTGAAGAG 5929000 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || ||||| ||||| |||||||| ||||| || ||| ||| | || | Sbjct 5928999 ATCAGTTCCATGGTACTTACAAAAATGAAGGAAACTGCCGAAGCCTATTTAGGCAAATCG 5928940 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || || |||| || || || || || || |||||||| ||| | ||| |||| |||||| Sbjct 5928939 GTCACAAATGCCGTTATCACCGTACCAGCCTATTTCAACGATTCGCAAAGGCAGGCAACT 5928880 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || |||| | || || | ||| | || |||||||| |||||||| || Sbjct 5928879 AAAGATGCCGGTACTATTTCCGGCTTGCAAGTTTTGCGTATTATTAACGAACCTACGGCT 5928820 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 ||||| | || || || | ||| || || | ||| | ||| ||| | || | Sbjct 5928819 GCTGCCATTGCCTACGG-TTTGGATAA--GAAGGGAACTGGGGAACGTAATGTCTTGATT 5928763 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTT--CAATTGAAGATGGGGTAT 451550 |||||| | ||||| || ||| |||| | | | ||| | ||||| ||||| | | Sbjct 5928762 TTTGATCTGGGTGGTGGTACTTTTGAT--GTGAGCATTTTGACCATTGAGGATGGCATTT 5928705 Query 451551 TTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAA 451610 | || || ||| | ||| ||||||||| ||| | || || |||||| | |||||| || Sbjct 5928704 TCGAGGTCAAGTCCACCGCTGGTGATACGCATTTGGGTGGCGAAGATTTCGATAATCGAA 5928645 Query 451611 TTGT 451614 | || Sbjct 5928644 TGGT 5928641 >seq2 Length=15265516 Score = 152 bits (168), Expect = 2e-31 Identities = 263/378 (70%), Gaps = 7/378 (2%) Strand=Plus/Minus Query 451226 GAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAA 451285 ||||| ||| ||| || ||||| || || ||| | |||||| | |||||||||||| Sbjct 5350530 GAAAC-AAAGTTTTCGCGCCTGAGGAGATCTCAGCCATGGTTTTGGGCAAAATGAAAGAA 5350472 Query 451286 ACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTAT 451345 ||||| || || | || || || |||| || | || || || ||||| Sbjct 5350471 ACAGCTGAGGCTTACTTGGGCAAGAAGGTCACCCATGCTGTGGTAACGGTGCCTGCTTAC 5350412 Query 451346 TTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTT 451405 ||||| ||||| ||| | || || || |||||||| || |||||| || || |||| Sbjct 5350411 TTCAACGATGCTCAAAGACAGGCCACGAAAGATGCTGGGACTATTGCCGGGTTGGTTGTT 5350352 Query 451406 CTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAA 451465 | | |||||||||||||| || || || || | || || || | ||| || ||| Sbjct 5350351 ATGAGGATTATTAATGAACCAACTGCTGCGGCAATTGCCTACGGTTT-GGATAAG--AAA 5350295 Query 451466 GAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCT 451525 || | || || ||| |||| || |||||||| ||||| || ||| |||| || Sbjct 5350294 GAC---GGGGAGAAGAATGTTTTGGTGTTTGATTTGGGTGGTGGTACTTTTGATGTCTCG 5350238 Query 451526 GTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTA 451585 | || | ||||| ||||||| ||||| || ||| |||||||||||||| ||||| Sbjct 5350237 CTCCTGACCATTGATAATGGGGTGTTTGAGGTCGTGGCGACCAATGGTGATACCCATCTG 5350178 Query 451586 GGAGGTGAAGATATTGAT 451603 || ||||||||| | ||| Sbjct 5350177 GGTGGTGAAGATTTCGAT 5350160 Score = 140 bits (154), Expect = 1e-27 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||||||||| |||||||| || || || || ||||| || || | || Sbjct 12970124 AATGCAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCGTC 12970183 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || || | | ||| || ||||| ||||| || || ||||| || ||||| Sbjct 12970184 AGATACTATCGAGAATGTGAAAGCTAAGATTCAGGATAAAGAGGGGATTCCCCCGGATCA 12970243 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||||| | || ||| | |||||||| || || |||||| | || | | ||||| || Sbjct 12970244 GCAACGTCTCATCTTCGCCGGGAAACAGCTCGAGGATGGACGTACCCTCTCCGATTACAA 12970303 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| | || |||||| |||| |||||||| ||||| Sbjct 12970304 TATCCAGAAGGAATCCACCCTTCACCTAGTTTTAAGACTCAGAGG 12970348 >seq8 Length=14581690 Score = 129 bits (142), Expect = 2e-24 Identities = 253/369 (69%), Gaps = 4/369 (1%) Strand=Plus/Minus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTT 451955 |||| ||||||| || || ||||| || ||||||| ||||||||| || || | Sbjct 1632191 ATGATGTTGTGCTGGTTGGGGGTTCGACCAGAATTCCCAAAATTCAAAATTTGCTCCAGA 1632132 Query 451956 CTTATTTTG-GAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATAT 452014 ||||||| | |||| || ||| | ||| | ||||| || ||||||||||| ||| Sbjct 1632131 ATTATTTTTCGGGGAAGACC-CTAAATTTGAGTATTAATCCCGACGAAGCTGTTGCTTAT 1632073 Query 452015 GGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTC-AGATGATGAAAAATTAGGAGATAT 452073 ||||| || |||||||| || ||| | | ||| || | | ||||| | ||| | Sbjct 1632072 GGTGCGGCTGTTCAAGCTGCAATTTTGAGTGGTGATAGCAGTTCGAAAAT-ACAAGACGT 1632014 Query 452074 TCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGAC 452133 || | || ||||| |||||| |||| ||||| | |||||||| || || | ||| | Sbjct 1632013 GTTGCTTGTTGATGTTACACCTTTATCACTTGGTATCGAAACAGCAGGAGGTGTTATGTC 1631954 Query 452134 TAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGC 452193 || | | |||| | ||||| || ||| | | |||||| |||| || Sbjct 1631953 GAAGATTGTAGAACGCAATGCGAGAATTCCCTGCAAACAAACTCAAACTTTTACCACTTA 1631894 Query 452194 AAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACG 452253 ||||| ||||||| ||| | |||||||||||||||||| || | || |||||| Sbjct 1631893 TTCCGATAATCAACCAGCTGTTAGTATTCAAGTGTTTGAAGGGGAGAGAGCCATGACAAA 1631834 Query 452254 AGATAATAA 452262 ||||| || Sbjct 1631833 GGATAACAA 1631825 >seq7 Length=16482863 Score = 113 bits (124), Expect = 2e-19 Identities = 277/420 (66%), Gaps = 14/420 (3%) Strand=Plus/Plus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || ||||| | |||||||| | | || || ||| || | ||||| || |||||| Sbjct 4701281 GGCAAGCCGAAAATTCAAGTCGAACACAAGGGAGAAGTCAAGAAGTTTGCACCGGAAGAA 4701340 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || ||||| || || || ||||| |||||||| ||| ||| | || || Sbjct 4701341 ATCAGTTCGATGGTGCTGACGAAGATGAAGGAAACAGCCGAAGCTTATTTGGGAACTAGT 4701400 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | || || || || || || || || |||||||| || |||| ||||||| || Sbjct 4701401 GTGAGGGACGCCGTCATCACAGTCCCGGCATATTTCAACGACTCACAGAGGCAAGCCACA 4701460 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || || || || ||| || ||||| || || | | || ||||||||||| ||||| Sbjct 4701461 AAGGACGCCGGTGTTATCGCCGGTTTGAACGTCATGAGGATAATTAATGAACCGACAGCG 4701520 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAA----GaaaaaaaTATTTT 451488 ||||| | || ||||| ||| | ||||| ||| |||| ||| | || Sbjct 4701521 GCTGCATTGGCTTATGGGTTAG-------ATAAGAATTTGAAGGGCGAAAGAAACGTCTT 4701573 Query 451489 AGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG--- 451545 | || ||||| ||||| || ||| || ||| | || | || || || || Sbjct 4701574 GATCTTCGATTTGGGTGGTGGCACTTTCGACGTGTCTATTCTAACTATCGACGAAGGCTC 4701633 Query 451546 GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | | |||||||||| || || ||||| || || || || |||||||| | ||||| Sbjct 4701634 GTTGTTTGAAGTAAGAGCCACTGCAGGTGACACCCACCTCGGTGGTGAAGACTTCGATAA 4701693 Score = 113 bits (124), Expect = 2e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| |||||||| || || || || | || || ||| | ||| Sbjct 10793842 ATGCAAATTTTCGTCAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAACCTTCT 10793783 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | |||| || || ||||| |||||||| || || || || ||| Sbjct 10793782 GATACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAA 10793723 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || ||| | || |||||||||||||| || | ||| | | || || ||| Sbjct 10793722 CAAAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACTCTTTCCGACTACAAT 10793663 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | || || | || || ||||| || || Sbjct 10793662 ATCCAAAAAGAATCCACCCTCCACTTGGTGTT 10793631 Score = 111 bits (122), Expect = 6e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| ||||| |||||| | || || ||| | || Sbjct 10794070 ATGCAGATCTTCGTCAAGACCTTGACTGGGAAAACCATTACTTTGGAAGTCGAACCTTCC 10794011 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || ||||| ||||||||||| || || || || ||| Sbjct 10794010 GACACGATTGAAAACGTCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCACCAGACCAA 10793951 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || || | ||||||||||| |||||||| | || | | ||||| || Sbjct 10793950 CAAAGATTGATCTTTGCCGGGAAACAACTAGAAGATGGGCGTACCCTCTCAGATTACAAC 10793891 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || |||||||| ||||| | ||||||| Sbjct 10793890 ATCCAGAAGGAATCCACCCTTCACTTGGTATTGCGTTTGAGAGG 10793847 Score = 111 bits (122), Expect = 6e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||||||||| || || | || || || | || Sbjct 10794526 ATGCAGATCTTCGTGAAGACTTTGACTGGTAAAACCATCACCTTGGAGGTCGAGCCCTCC 10794467 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | ||| || || || || |||||||| || || || || || Sbjct 10794466 GATACCATCGAAAACGTCAAAGCTAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCAG 10794407 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || ||| | || |||||||| ||||| ||| | |||||| | || || || Sbjct 10794406 CAACGTTTGATCTTCGCTGGCAAACAACTCGAAGACGGACGCACTTTGTCTGACTACAAC 10794347 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || || ||||| || || ||| |||| || Sbjct 10794346 ATCCAGAAGGAATCGACGCTCCACTTGGTTTTGAGATTGAGGGG 10794303 Score = 109 bits (120), Expect = 2e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||||| ||||| ||||| | || ||||| |||| Sbjct 10792702 ATGCAAATTTTCGTGAAGACGTTGACTGGGAAAACAATTACGTTGGAAGTTGAGCCATCG 10792643 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || |||||||||||||||||||| ||||| || || || Sbjct 10792642 GACACGATTGAAAATGTGAAGGCCAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAG 10792583 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || || | || ||||| | |||||||| | || | |||| || ||| Sbjct 10792582 CAAAGATTGATCTTTGCGGGAAAACAGTTGGAAGATGGTCGCACACTTTCGGACTACAAT 10792523 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 || | ||||| | || ||||| |||| ||| Sbjct 10792522 ATCCAAAAGGAATCCACTCTTCATCTAGTCTTA 10792490 Score = 107 bits (118), Expect = 8e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || ||||| | |||||||| | | || || ||| || | ||||| || |||||| Sbjct 4698575 GGCAAGCCGAAAATTCAAGTCGAACACAAGGGAGAAGTCAAGAAGTTTGCACCGGAAGAA 4698516 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || ||||| || || || ||||| |||||||| ||| ||| | || || Sbjct 4698515 ATCAGTTCGATGGTGCTGACGAAGATGAAGGAAACAGCCGAAGCTTATTTGGGAACTAGT 4698456 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | || || || || || || || || |||||||| || |||| ||||||| || Sbjct 4698455 GTGAGGGACGCCGTCATCACAGTCCCGGCATATTTCAACGACTCACAGAGGCAAGCCACC 4698396 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 ||||| || || ||| || ||||| || || | | || ||||||||||| ||||| Sbjct 4698395 AAAGACGCCGGTGTTATCGCCGGTTTGAACGTCATGAGGATAATTAATGAACCGACAGCG 4698336 Query 451433 GCTGCTCTAGCATATGG 451449 ||||| | || ||||| Sbjct 4698335 GCTGCATTGGCTTATGG 4698319 Score = 107 bits (118), Expect = 8e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||||||||| |||||||| ||||| || || || || || ||| | ||| Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | || || |||||||| || || || || || || || ||| Sbjct 10793098 GATACAATTGAGAACGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAA 10793039 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || || | || |||||||| ||||| || | ||| | | ||||| ||| Sbjct 10793038 CAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAAT 10792979 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| | || || ||||| || || Sbjct 10792978 ATCCAGAAGGAATCCACTCTCCACTTGGTGTT 10792947 Score = 104 bits (114), Expect = 9e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || || ||| | || || ||| |||| Sbjct 10793386 ATGCAAATCTTCGTAAAGACTTTGACTGGGAAGACGATCACTTTGGAAGTAGAACCATCG 10793327 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| |||| |||||||| || || || || ||||| || ||||| Sbjct 10793326 GACACTATCGAAAACGTTAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCAG 10793267 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || ||| | || ||||| || |||||||| ||||| | | || || || Sbjct 10793266 CAGAGGTTGATCTTCGCCGGCAAACAGCTCGAAGATGGCCGAACTCTCTCCGACTACAAC 10793207 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 ||| | || || ||||||| ||||||||||| Sbjct 10793206 ATTCAAAAAGAATCAACACTCCACTTAGTATT 10793175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975665696476856