Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 >seq3 Length=31381287 Score = 111 bits (122), Expect = 2e-19 Identities = 311/467 (67%), Gaps = 18/467 (4%) Strand=Plus/Minus Query 154647 CAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGAT 154706 || ||||| |||||||| ||| || || || |||||| ||| | ||| |||| Sbjct 15584200 CAAGGTGAATATGCAGGTCTGAGGGCCATTCAGTGCTACCATGAAG---CCCGAGGTGAT 15584144 Query 154707 AAAA---GAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCT 154763 |||| | | || |||||||| || | | || ||||| || || || || ||||| Sbjct 15584143 AAAAATCGGGACGTTTGTTTGATTCCTGTGAGTGCCCATGGGACGAACCCAGCAAGTGCC 15584084 Query 154764 GTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATG-ATGATGGTAACATAGACAT 154822 ||||| |||||| ||| | |||| | |||| |||||||| || || | Sbjct 15584083 CAAATGGCCGGGATGCGGATTGAACCAGTCA-GAGTGAAACATGATGGTTCGATCGATGT 15584025 Query 154823 CAAAGATCT---AGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGAT 154879 | ||||||| || |||| | | | || || | | || || || || ||||| Sbjct 15584024 CGAAGATCTTAAAGCGAAGGCCGAGAAGTTCAA--CAGTCGT-CTCTCGTGCATGATGAT 15583968 Query 154880 TACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGT 154939 || |||||||| || |||| | ||||| ||| | | ||||| ||| ||| | Sbjct 15583967 CACCTACCCATCAACTAATGGACTTTTTGAGGA-AACGGTCG-CAGATGTGTGTGATATT 15583910 Query 154940 T--CATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGA 154997 ||| | || ||||||||||| || || ||||| || || | || ||||| || ||| Sbjct 15583909 ATCCATAAAAACGGTGGTCAGGTCTACCTAGATGGTGCCAACATGAACGCACAAGTCGGA 15583850 Query 154998 CTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTC 155057 | ||| |||| || || | || || | ||||| ||||| || ||||| ||| Sbjct 15583849 TTGTGCCGACCTGGTGATTACGGCGGTGACGTCTCCCATCTGAACTTGCACAAAACCTTC 15583790 Query 155058 TGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 || || || ||||||||||| |||||||| | ||||| || || || Sbjct 15583789 TGCATACCGCATGGAGGTGGTGGTCCTGGTATGGGTCCAATCGGGGT 15583743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579197725986880