Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq3 111 2e-19
>seq3
Length=31381287
Score = 111 bits (122), Expect = 2e-19
Identities = 311/467 (67%), Gaps = 18/467 (4%)
Strand=Plus/Minus
Query 154647 CAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGAT 154706
|| ||||| |||||||| ||| || || || |||||| ||| | ||| ||||
Sbjct 15584200 CAAGGTGAATATGCAGGTCTGAGGGCCATTCAGTGCTACCATGAAG---CCCGAGGTGAT 15584144
Query 154707 AAAA---GAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCT 154763
|||| | | || |||||||| || | | || ||||| || || || || |||||
Sbjct 15584143 AAAAATCGGGACGTTTGTTTGATTCCTGTGAGTGCCCATGGGACGAACCCAGCAAGTGCC 15584084
Query 154764 GTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATG-ATGATGGTAACATAGACAT 154822
||||| |||||| ||| | |||| | |||| |||||||| || || |
Sbjct 15584083 CAAATGGCCGGGATGCGGATTGAACCAGTCA-GAGTGAAACATGATGGTTCGATCGATGT 15584025
Query 154823 CAAAGATCT---AGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGAT 154879
| ||||||| || |||| | | | || || | | || || || || |||||
Sbjct 15584024 CGAAGATCTTAAAGCGAAGGCCGAGAAGTTCAA--CAGTCGT-CTCTCGTGCATGATGAT 15583968
Query 154880 TACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGT 154939
|| |||||||| || |||| | ||||| ||| | | ||||| ||| ||| |
Sbjct 15583967 CACCTACCCATCAACTAATGGACTTTTTGAGGA-AACGGTCG-CAGATGTGTGTGATATT 15583910
Query 154940 T--CATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGA 154997
||| | || ||||||||||| || || ||||| || || | || ||||| || |||
Sbjct 15583909 ATCCATAAAAACGGTGGTCAGGTCTACCTAGATGGTGCCAACATGAACGCACAAGTCGGA 15583850
Query 154998 CTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTC 155057
| ||| |||| || || | || || | ||||| ||||| || ||||| |||
Sbjct 15583849 TTGTGCCGACCTGGTGATTACGGCGGTGACGTCTCCCATCTGAACTTGCACAAAACCTTC 15583790
Query 155058 TGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104
|| || || ||||||||||| |||||||| | ||||| || || ||
Sbjct 15583789 TGCATACCGCATGGAGGTGGTGGTCCTGGTATGGGTCCAATCGGGGT 15583743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579197725986880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |