Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3 100 3e-16 >seq3 Length=31381287 Score = 100 bits (110), Expect = 3e-16 Identities = 430/671 (64%), Gaps = 18/671 (3%) Strand=Plus/Minus Query 159118 ATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAACTGATGCCTGTG 159177 ||| | || |||||| ||| || |||||||| ||| || | |||| |||||||| Sbjct 15584404 ATGATCCCGCTTGGTTCTTGCACAATGAAACTTAACTCAACGACAGAGATGATGCCTTGT 15584345 Query 159178 TCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAGACCATGGGTTAT 159237 || | || | ||| || | | ||||| | | ||| || || || |||| ||| Sbjct 15584344 TCCTTCAAACACTTTACTGATATTCATCCGTTTGCGCCTTTGGATCAAACTTTGGGGTAT 15584285 Query 159238 CAAAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTATA 159297 || | | | | || | ||||| | |||| ||||| |||| ||| | | | Sbjct 15584284 CACCAGTTGTTTGCAGAGCTTGAGAAAGATCTTTGTGCCATCACTGGGTATGA--CAAGA 15584227 Query 159298 TCA--TTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAG 159355 | | || || || || || | || ||||| |||||||| ||| || || || Sbjct 15584226 TTAGTTTCCAGCCGAATAGTGGCGCCCAAGGTGAATATGCAGGTCTGAGGGCCATTCAGT 15584167 Query 159356 CATACCATCAAGGATCAGGAGATGATAAAA---GAAATGTATGTTTGATACCAGAGTCAG 159412 |||||| ||| | ||| |||||||| | | || |||||||| || | | | Sbjct 15584166 GCTACCATGAAG---CCCGAGGTGATAAAAATCGGGACGTTTGTTTGATTCCTGTGAGTG 15584110 Query 159413 CACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGT 159472 | ||||| || || || ||| || ||||| |||||| ||| | |||| | Sbjct 15584109 CCCATGGGACGAACCCAGCAAGTGCCCAAATGGCCGGGATGCGGATTGAACCAGTCA-GA 15584051 Query 159473 GTGATG-ATGATGGCAACATAGACATCAAAGATCT---AGAGAAGAAAGCAATCATGAAT 159528 |||| ||||||| || || || ||||||| || |||| | | | || Sbjct 15584050 GTGAAACATGATGGTTCGATCGATGTCGAAGATCTTAAAGCGAAGGCCGAGAAGTTCAA- 15583992 Query 159529 ACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACA 159588 || | | || || || || ||||| || || ||||| || |||| | ||||| | Sbjct 15583991 -CAGTCGT-CTCTCGTGCATGATGATCACCTACCCATCAACTAATGGACTTTTTGAGGAA 15583934 Query 159589 AACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGT 159648 | || | | | ||| | ||| | ||| | || ||||||||||| || || |||||| Sbjct 15583933 ACGGTCGCAGATGTGTGTGATATTATCCATAAAAACGGTGGTCAGGTCTACCTAGATGGT 15583874 Query 159649 GCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGT 159708 || || | || ||||| || || | ||| |||| || || | || || | Sbjct 15583873 GCCAACATGAACGCACAAGTCGGATTGTGCCGACCTGGTGATTACGGCGGTGACGTCTCC 15583814 Query 159709 CATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGT 159768 ||||| ||||| || || || ||||| || || ||||||||||| |||||||| | ||| Sbjct 15583813 CATCTGAACTTGCACAAAACCTTCTGCATACCGCATGGAGGTGGTGGTCCTGGTATGGGT 15583754 Query 159769 CCTATTGGTGT 159779 || || || || Sbjct 15583753 CCAATCGGGGT 15583743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588035895967520