Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq7 176 1e-38
seq2 154 3e-32
seq4 145 2e-29
>seq7
Length=16482863
Score = 176 bits (194), Expect = 1e-38
Identities = 172/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | ||| || | ||| |||||||| || || || ||||||||||||| ||||||
Sbjct 10792937 TCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGT 10792996
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| || ||||| || || || || || ||||| | || |||||||||||| || || ||
Sbjct 10792997 ACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACC 10793056
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|||||||||||||| || ||||||||||||||| || || ||| ||| ||||| ||
Sbjct 10793057 CTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGACTTCCAG 10793116
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| | || || || |||| |||||| ||||| | ||||||
Sbjct 10793117 GGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158
Score = 170 bits (188), Expect = 4e-37
Identities = 171/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | ||| || | ||| || || || ||||||||||| ||||| |||| |||||
Sbjct 10793165 TCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGT 10793224
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| |||||||||||||| || || |||||||| | | || || ||||| ||||| ||
Sbjct 10793225 TCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCC 10793284
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|||||||| |||||||| ||| ||||| || || |||||||| ||| ||||| |
Sbjct 10793285 CTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACTTCCAA 10793344
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | |||||| || |||||||| |||||||| | ||||||
Sbjct 10793345 AGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386
Score = 161 bits (178), Expect = 2e-34
Identities = 169/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | ||| || | ||| || ||||| |||||||| |||||||| |||| ||||||
Sbjct 10793621 TCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAAAGAGT 10793680
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| || ||||| || || || || |||||||| | || |||||||||||| || || ||
Sbjct 10793681 ACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATACC 10793740
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| |||||||| || || ||| || ||||||||||| || ||| ||| || || |
Sbjct 10793741 TTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACCTCCAA 10793800
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| | ||||| || |||| ||||| ||||| | ||||||
Sbjct 10793801 GGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCAT 10793842
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988
|| || || ||||||||||| || ||||| |||||||| || | ||| || | ||||||
Sbjct 10792491 AAGACTAGATGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCT 10792550
Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048
|| | ||| || || || ||||| | || ||| |||||||| ||||| ||||| || |||
Sbjct 10792551 TCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGGAATACCTTCCTTATCT 10792610
Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108
|||||||| ||| || || ||||| |||||||| || ||||| | |||| ||
Sbjct 10792611 TGAATTTTGGCCTTCACATTTTCAATCGTGTCCGATGGCTCAACTTCCAACGTAATTGTT 10792670
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || ||||| || || ||||| | ||||||
Sbjct 10792671 TTCCCAGTCAACGTCTTCACGAAAATTTGCAT 10792702
Score = 141 bits (156), Expect = 2e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || || |||||||||||||| || || | || || | |||||||||||| ||
Sbjct 10792728 TGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCTTCGAGTTGT 10792787
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || ||||| | | || || |||||||||||||||||||| || || |||||
Sbjct 10792788 TTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCCTGGATTTTA 10792847
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || |||||||| ||||| || ||| ||||| | || | ||||||||| |||
Sbjct 10792848 GCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGTCTTTCCCGTC 10792907
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|| || || ||||| | ||||||
Sbjct 10792908 AAGGTCTTCACGAAAATTTGCAT 10792930
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
||| || | |||||| ||||| || || || || |||||||| | || || | ||||||
Sbjct 10793858 CAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGCCCATC 10793917
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
||| || || || || || ||||| | || |||||||||||| || || ||||| || ||
Sbjct 10793918 TTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTATC 10793977
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
||||| || ||||||||| ||||| ||||| ||| ||| ||||| | |||| ||
Sbjct 10793978 CTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACTTCCAAAGTAATGGT 10794037
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || ||||| || || ||||| | |||||
Sbjct 10794038 TTTCCCAGTCAAGGTCTTGACGAAGATCTGCAT 10794070
Score = 127 bits (140), Expect = 5e-24
Identities = 163/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGT 194978
|| || | |||||| | |||||| ||||| || || || || |||||||||| |||| ||
Sbjct 10794078 CTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAG-GT 10794136
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| || |||||||| || ||||| ||||| || | || ||||| |||||||| |||||
Sbjct 10794137 GCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCC 10794196
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|| ||||| || || || ||||||||||| || || || || || ||||| ||
Sbjct 10794197 CTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAG 10794256
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | ||||| || || | || || ||||| | ||||||
Sbjct 10794257 AGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298
>seq2
Length=15265516
Score = 154 bits (170), Expect = 3e-32
Identities = 168/223 (75%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||||||||| ||||| |||||||| ||||| || || || ||||||||||||| || ||
Sbjct 12970346 TCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGT 12970287
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||| |||||||| || || |||||||| || ||||| || || || ||||| ||
Sbjct 12970286 ACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCC 12970227
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||||| || ||||| || || || ||||| || || || || || || |||||
Sbjct 12970226 CTCTTTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAG 12970167
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
||| | ||||| || |||| ||||| ||||| | ||||||
Sbjct 12970166 GGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCATT 12970124
>seq4
Length=12290766
Score = 145 bits (160), Expect = 2e-29
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
|||||| | ||||| ||||| || || || || |||||||||| | ||| | |||||
Sbjct 488953 CAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATC 489012
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
|| ||||| ||||| || || || | || ||||| || || ||||||||||| |||||
Sbjct 489013 CTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTC 489072
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
|||||||| ||||| || || |||||||| ||| || || ||||| || | ||
Sbjct 489073 CTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGT 489132
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || |||| |||||| ||||| | ||||||
Sbjct 489133 CTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109452003884894
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |