Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq7 125 5e-24
seq4 82.4 5e-11
>seq7
Length=16482863
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| |||||||| |||||||||||||| | || ||| ||||| ||||| ||||| ||
Sbjct 10794300 CCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAC 10794359
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
| | ||| | || || || ||||| || || || || | |||||||||||| | ||
Sbjct 10794360 AAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 10794419
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| || |||||||| ||||| ||||||| | | || | || || ||| ||
Sbjct 10794420 ATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACC 10794479
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| | ||| |||||||| || || | ||||||||| |||||||||||
Sbjct 10794480 TCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526
Score = 118 bits (130), Expect = 7e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|||||||||| | |||||||||||||| ||| ||| ||||| ||||| || || ||
Sbjct 10794072 CCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 10794131
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
| | | ||| | || || || ||||| || || || || | || || || ||| | ||
Sbjct 10794132 AAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 10794191
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| ||||||||||| ||||| ||||||| | |||| ||| || ||||||
Sbjct 10794192 ATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACT 10794251
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| | || ||||| || || ||||| ||||| || ||||| ||||||
Sbjct 10794252 TCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCATA 10794299
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| || ||||| | ||| |||||||||| ||| ||| ||||| ||||| || || ||
Sbjct 10793844 CCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAG 10793903
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | || |||| || || ||||| |||||||| || | || ||| |||||| | ||
Sbjct 10793904 AGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793963
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| ||| ||||| || |||||| |||||| | | |||| || | || ||
Sbjct 10793964 ATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACT 10794023
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| | || |||||||| || || | ||||| || |||||||||||
Sbjct 10794024 TCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCAT 10794070
Score = 84.2 bits (92), Expect = 1e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838
|||| ||| ||| || || || || ||||||||||| | || |||| |||| ||||
Sbjct 10792500 TGAAGAGTGGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCTTCCAACTGT 10792559
Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898
||||| ||||| || | || |||||||||| | || | || ||||| || ||| ||
Sbjct 10792560 TTTCCCGCAAAGATCAATCTTTGCTGGTCTGGGGGAATACCTTCCTTATCTTGAATTTTG 10792619
Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958
|| || | | |||| || | |||||| || | || || ||||| || ||
Sbjct 10792620 GCCTTCACATTTTCAATCGTGTCCGATGGCTCAACTTCCAACGTAATTGTTTTCCCAGTC 10792679
Query 34959 AGAGTCTTCACAAAGATCTGCATA 34982
| |||||||| || || ||||||
Sbjct 10792680 AACGTCTTCACGAAAATTTGCATA 10792703
>seq4
Length=12290766
Score = 82.4 bits (90), Expect = 5e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
|||||| || |||| ||| ||| ||||| ||||| || || || | | ||| ||||
Sbjct 488953 CAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATC 489012
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
||||||||||| || ||||| || | || || || || | || | || ||||||||
Sbjct 489013 CTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTC 489072
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||| ||| |||||| | | || | || | ||| || || | || |||||
Sbjct 489073 CTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGT 489132
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || ||||| ||||| || || |||||
Sbjct 489133 CTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324625362625296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |