Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 244 1e-59 seq4 183 3e-41 >seq5 Length=15459558 Score = 244 bits (270), Expect = 1e-59 Identities = 592/893 (66%), Gaps = 15/893 (2%) Strand=Plus/Minus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 ||||| | || || ||||| | ||| | || ||||||||||| || || || || Sbjct 2625069 ACTCCGCTCTTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTG 2625010 Query 18721 GATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAAT 18780 || ||| ||| ||||| || ||||| | | || || ||||| | | | || || Sbjct 2625009 GAAATAATCGTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAAC 2624950 Query 18781 TCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATT 18840 || | | ||| || || ||||||| || ||| | ||||| | | || |||||| Sbjct 2624949 TCGCCCAACAATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATT 2624890 Query 18841 CCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCT 18900 || || | | || |||| || || || | ||||| | || || || || || ||| Sbjct 2624889 CCAATCATGCTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCT 2624830 Query 18901 GATATAATAGATACAACTCTATCTTCATTAGGAGGGTAT----AGAAGATGTTTAAACAT 18956 ||||| | || | |||| ||| || | | | || ||||| Sbjct 2624829 TGGATAATGCTTTGAATCCGTTCTTT----GGACGGCTTCTGCACCAAGTGAGAGAACAT 2624774 Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 |||||| |||||||| |||||||| |||||||| || |||| |||||| |||||||| Sbjct 2624773 CAAACAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGT 2624714 Query 19017 TAAACCAGGCATCAG--TCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAA 19074 | ||| ||||| || ||| | ||||| | |||||| || |||||||| ||||| Sbjct 2624713 GAGACCTGGCATAAGATTCCGC--TTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAG 2624656 Query 19075 AAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTA 19134 ||||| || ||||| || || ||||| || || | || ||| ||| || | || | || Sbjct 2624655 AAGAAAATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTG 2624596 Query 19135 TTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATA 19194 | | ||||| || ||||| || |||||||| || ||||| |||| ||||| || Sbjct 2624595 CTGTTTATCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATC 2624536 Query 19195 GAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTG 19254 | ||| || | || ||| | | || || || | || ||||| | ||| Sbjct 2624535 GCATTGAACAAGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTG 2624476 Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 ||||| || ||||| || ||||| ||||| || || || |||||||| || | ||||| Sbjct 2624475 TACATCTCCGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCG 2624416 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 || | || || || | || || ||||| | ||||| || || ||||| ||| Sbjct 2624415 GTCACTTGCACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAG 2624356 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTA 19431 ||||| |||||||| | || || ||| || | |||||| || | | | | Sbjct 2624355 GCTGCGAAAAATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTC 2624296 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 ||||| || | | |||||| || |||||||||||||| |||||||| || || || Sbjct 2624295 TTCCAGTCGTCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCC 2624236 Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||| || || ||| ||| || || | || || || ||||| | ||||| Sbjct 2624235 GCTTGCTTGTATTTGTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAA 2624183 >seq4 Length=12290766 Score = 183 bits (202), Expect = 3e-41 Identities = 454/687 (66%), Gaps = 11/687 (2%) Strand=Plus/Minus Query 46964 TAATTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATA 47023 ||||||| ||| ||||| || || | ||| |||||| || | ||| || | |||||| Sbjct 1759649 TAATTTGCTTTTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATA 1759590 Query 47024 ATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGA 47083 ||||| || ||||||||||| | ||| || ||||||||||| || | Sbjct 1759589 GTACATCCCTGTCTTTAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACATGACCCC 1759530 Query 47084 ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCT 47143 |||| | || | | |||||||||||| | || |||||||| |||||||| || ||||| Sbjct 1759529 ATAATTCGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCT 1759470 Query 47144 ATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTG 47203 |||||| |||||||| | |||||| | || | |||||||| ||||||||||| | ||| Sbjct 1759469 ATCAGCCGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTG 1759410 Query 47204 TTTAATGTCTTCTGGGAGAT-----TAGTATTTTGAATAGATCCTCCgttttctataatt 47258 ||| | || || |||| || | | |||||||| || || || | ||||| Sbjct 1759409 TTTCAAATCGTC-GGGA-ATCCCCGGAATGTTTTGAATCGAACCATAATTCGCAATAATC 1759352 Query 47259 ttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGA 47318 | || || | || |||||| | ||||| || || | || || || Sbjct 1759351 TGATTCTTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGA 1759292 Query 47319 TTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGT 47378 || || | |||||| || ||||| | || | | ||| |||||| || || ||| Sbjct 1759291 TTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGT 1759232 Query 47379 TCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCA-TGGATGCAAC 47437 || | ||||||||||| || |||||||| ||||| || || || |||| |||| ||| Sbjct 1759231 TCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAA- 1759173 Query 47438 TAATAAGC-TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCC 47496 || ||| ||| | || || ||||| || | |||||||| Sbjct 1759172 -AAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCC 1759114 Query 47497 AAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAG 47556 | | || || ||| || ||| | || || || | | |||| ||| | ||| | Sbjct 1759113 ACAAATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTG 1759054 Query 47557 AACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATG 47616 | || | ||| || | ||| || ||||| || || ||||| ||||| || ||||| | Sbjct 1759053 ACCCTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGG 1758994 Query 47617 CACTATAATATATTGTTTCAAATATTT 47643 | | ||||| | ||||| || |||| Sbjct 1758993 CGCCGTAATAAAGCGTTTCGAAAATTT 1758967 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 47000 ACTCGCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATA 47059 |||| ||| || |||| |||| |||||| ||||| || | |||| ||| ||||| Sbjct 1763030 ACTCACTGGATTCGTTCTCAAATTATACATCCCAGTTTTGAGACCTTTCTGCCAACCATA 1762971 Query 47060 GAAATGCAT--ACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47117 ||||||||| || | ||| | ||||| || | |||||||| ||| | | | Sbjct 1762970 GAAATGCATCGACGACATAACCGCG--TAACTTGGAGCCCCAATATGAACATTCATCGCT 1762913 Query 47118 TGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGT 47177 || || || |||||||| || || | ||| |||||||| || | || | |||| || Sbjct 1762912 TGGCTTTGGTCAATAAACGCCCCCCGATCGGCTGCCATTTCAATAACGATTTTTTGCGGA 1762853 Query 47178 ATCTCCCATACTGTTTTATAAAT 47200 |||||||| ||||||||||| || Sbjct 1762852 ATCTCCCAGACTGTTTTATAGAT 1762830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562094171118480