Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq5 244 1e-59
seq4 183 3e-41
>seq5
Length=15459558
Score = 244 bits (270), Expect = 1e-59
Identities = 592/893 (66%), Gaps = 15/893 (2%)
Strand=Plus/Minus
Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720
||||| | || || ||||| | ||| | || ||||||||||| || || || ||
Sbjct 2625069 ACTCCGCTCTTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTG 2625010
Query 18721 GATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAAT 18780
|| ||| ||| ||||| || ||||| | | || || ||||| | | | || ||
Sbjct 2625009 GAAATAATCGTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAAC 2624950
Query 18781 TCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATT 18840
|| | | ||| || || ||||||| || ||| | ||||| | | || ||||||
Sbjct 2624949 TCGCCCAACAATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATT 2624890
Query 18841 CCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCT 18900
|| || | | || |||| || || || | ||||| | || || || || || |||
Sbjct 2624889 CCAATCATGCTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCT 2624830
Query 18901 GATATAATAGATACAACTCTATCTTCATTAGGAGGGTAT----AGAAGATGTTTAAACAT 18956
||||| | || | |||| ||| || | | | || |||||
Sbjct 2624829 TGGATAATGCTTTGAATCCGTTCTTT----GGACGGCTTCTGCACCAAGTGAGAGAACAT 2624774
Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016
|||||| |||||||| |||||||| |||||||| || |||| |||||| ||||||||
Sbjct 2624773 CAAACAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGT 2624714
Query 19017 TAAACCAGGCATCAG--TCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAA 19074
| ||| ||||| || ||| | ||||| | |||||| || |||||||| |||||
Sbjct 2624713 GAGACCTGGCATAAGATTCCGC--TTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAG 2624656
Query 19075 AAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTA 19134
||||| || ||||| || || ||||| || || | || ||| ||| || | || | ||
Sbjct 2624655 AAGAAAATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTG 2624596
Query 19135 TTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATA 19194
| | ||||| || ||||| || |||||||| || ||||| |||| ||||| ||
Sbjct 2624595 CTGTTTATCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATC 2624536
Query 19195 GAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTG 19254
| ||| || | || ||| | | || || || | || ||||| | |||
Sbjct 2624535 GCATTGAACAAGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTG 2624476
Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314
||||| || ||||| || ||||| ||||| || || || |||||||| || | |||||
Sbjct 2624475 TACATCTCCGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCG 2624416
Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374
|| | || || || | || || ||||| | ||||| || || ||||| |||
Sbjct 2624415 GTCACTTGCACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAG 2624356
Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTA 19431
||||| |||||||| | || || ||| || | |||||| || | | | |
Sbjct 2624355 GCTGCGAAAAATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTC 2624296
Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491
||||| || | | |||||| || |||||||||||||| |||||||| || || ||
Sbjct 2624295 TTCCAGTCGTCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCC 2624236
Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
|||| || || ||| ||| || || | || || || ||||| | |||||
Sbjct 2624235 GCTTGCTTGTATTTGTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAA 2624183
>seq4
Length=12290766
Score = 183 bits (202), Expect = 3e-41
Identities = 454/687 (66%), Gaps = 11/687 (2%)
Strand=Plus/Minus
Query 46964 TAATTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATA 47023
||||||| ||| ||||| || || | ||| |||||| || | ||| || | ||||||
Sbjct 1759649 TAATTTGCTTTTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATA 1759590
Query 47024 ATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGA 47083
||||| || ||||||||||| | ||| || ||||||||||| || |
Sbjct 1759589 GTACATCCCTGTCTTTAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACATGACCCC 1759530
Query 47084 ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCT 47143
|||| | || | | |||||||||||| | || |||||||| |||||||| || |||||
Sbjct 1759529 ATAATTCGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCT 1759470
Query 47144 ATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTG 47203
|||||| |||||||| | |||||| | || | |||||||| ||||||||||| | |||
Sbjct 1759469 ATCAGCCGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTG 1759410
Query 47204 TTTAATGTCTTCTGGGAGAT-----TAGTATTTTGAATAGATCCTCCgttttctataatt 47258
||| | || || |||| || | | |||||||| || || || | |||||
Sbjct 1759409 TTTCAAATCGTC-GGGA-ATCCCCGGAATGTTTTGAATCGAACCATAATTCGCAATAATC 1759352
Query 47259 ttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGA 47318
| || || | || |||||| | ||||| || || | || || ||
Sbjct 1759351 TGATTCTTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGA 1759292
Query 47319 TTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGT 47378
|| || | |||||| || ||||| | || | | ||| |||||| || || |||
Sbjct 1759291 TTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGT 1759232
Query 47379 TCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCA-TGGATGCAAC 47437
|| | ||||||||||| || |||||||| ||||| || || || |||| |||| |||
Sbjct 1759231 TCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAA- 1759173
Query 47438 TAATAAGC-TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCC 47496
|| ||| ||| | || || ||||| || | ||||||||
Sbjct 1759172 -AAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCC 1759114
Query 47497 AAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAG 47556
| | || || ||| || ||| | || || || | | |||| ||| | ||| |
Sbjct 1759113 ACAAATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTG 1759054
Query 47557 AACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATG 47616
| || | ||| || | ||| || ||||| || || ||||| ||||| || ||||| |
Sbjct 1759053 ACCCTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGG 1758994
Query 47617 CACTATAATATATTGTTTCAAATATTT 47643
| | ||||| | ||||| || ||||
Sbjct 1758993 CGCCGTAATAAAGCGTTTCGAAAATTT 1758967
Score = 95.1 bits (104), Expect = 1e-14
Identities = 144/203 (71%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 47000 ACTCGCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATA 47059
|||| ||| || |||| |||| |||||| ||||| || | |||| ||| |||||
Sbjct 1763030 ACTCACTGGATTCGTTCTCAAATTATACATCCCAGTTTTGAGACCTTTCTGCCAACCATA 1762971
Query 47060 GAAATGCAT--ACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47117
||||||||| || | ||| | ||||| || | |||||||| ||| | | |
Sbjct 1762970 GAAATGCATCGACGACATAACCGCG--TAACTTGGAGCCCCAATATGAACATTCATCGCT 1762913
Query 47118 TGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGT 47177
|| || || |||||||| || || | ||| |||||||| || | || | |||| ||
Sbjct 1762912 TGGCTTTGGTCAATAAACGCCCCCCGATCGGCTGCCATTTCAATAACGATTTTTTGCGGA 1762853
Query 47178 ATCTCCCATACTGTTTTATAAAT 47200
|||||||| ||||||||||| ||
Sbjct 1762852 ATCTCCCAGACTGTTTTATAGAT 1762830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562094171118480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |