Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq1425 187 2e-42
>seq1425
Length=145493
Score = 187 bits (206), Expect = 2e-42
Identities = 351/516 (68%), Gaps = 0/516 (0%)
Strand=Plus/Plus
Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931
|| || || || || ||||| || || || | || |||||||| || || || |||
Sbjct 66440 CCCGTAACATGTGCAATCATCCTTGTAAGAAGCGCATAACTGGCGATATTGAACGGCACC 66499
Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACG 29991
|| || ||||| ||||||| ||||||||| ||| ||| ||||| || ||| ||||
Sbjct 66500 CCCAGGCCCATATCCCCCGCCCTCTGGTACAGCAAACAGCTCAGCTCGCCCTCGGCCACG 66559
Query 29992 TAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTC 30051
||||||| || ||| || || || || ||||| | ||| ||||| || |||
Sbjct 66560 AAAAACTGCGCCAGACAGTGACATGGCGGCAGCGCCATTTTGTGCAAATCTTTCGGATTC 66619
Query 30052 CAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTT 30111
|| || ||| ||| || | || || | || || |||| || || | | |
Sbjct 66620 CACGCCGACATGATAATCCTCCGATCGTTCGGATTCGTCCTAATCGTGTGTATGACCCGC 66679
Query 30112 TGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCG 30171
|||||| ||||||||| || |||||| || | || ||||||| || ||
Sbjct 66680 GCCAGCTGGTCCACCCCCTCGTTCGTGTAGTCCCCCTGGACCCCCTTGTACTCCGCCCCA 66739
Query 30172 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30231
|| |||| ||||||||||||||| | || |||||||| ||||| || | ||| |||
Sbjct 66740 AAGTGCCGCCACTGGAACCCGTAGATGGGCCCCAGGTCCCCCTCCTCGTACTCCTCCAAG 66799
Query 30232 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30291
||| ||||| ||| | | | |||||||||||| || | || |||||
Sbjct 66800 CCCACTGAGTCCAGAAACGCGCGACTGCTGTTGGCGTCCCAAATGTGCACGTTTTTCTCC 66859
Query 30292 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30351
||| || || || || || || ||| ||| |||||| ||||||||||| ||||| ||
Sbjct 66860 TTGAGGTCGTTCGAATTCGTCGAGCCTTTGATGAACCAGAGCAGCTCCTCGACGACAGCG 66919
Query 30352 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30387
||| || |||| |||||| || || || ||||||
Sbjct 66920 CGCCAGAAAACCCGCTTGGTGGTCAGCAGCGGAAAC 66955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408607231583786
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |