Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_018874.1
Length=211518
Score E
Sequences producing significant alignments: (Bits) Value
seq3 86.0 8e-12
>seq3
Length=31381287
Score = 86.0 bits (94), Expect = 8e-12
Identities = 180/260 (69%), Gaps = 10/260 (4%)
Strand=Plus/Plus
Query 197037 AAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTCGGGATTGTAACAGGC 197096
||| || || || ||||| |||||| || | || || | | || ||| || || ||
Sbjct 16558627 AAATCCAGTTCCAATCTTGCAAATGCTTTGGAACTCCTCGCTTTCTTGATCATAGCAAGC 16558686
Query 197097 GAGTAAGAAAGCG-CCGTAGGTTCCCGTTCTCTTTCCCA---CCCCGTTGAAGCCTCCGA 197152
| | |||||| |||||||||||||| | |||||| ||| | | | || || |
Sbjct 16558687 CAAGA-GAAAGCCTCCGTAGGTTCCCGTCCG-TTTCCCTTTGCCCAGATAA--CCCCCAA 16558742
Query 197153 TAACCACCAGATCCAGAGTGTCGCACACCCCT-TCCATGTAATCTTTCTTCAGTTTGAGC 197211
| ||||| ||||| ||||| |||| ||| || |||| ||| ||||| ||||||||||||
Sbjct 16558743 TGACCACTAGATCGAGAGTATCGC-CACAACTGTCCAAGTAGTCTTTTTTCAGTTTGAGC 16558801
Query 197212 CAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATCATC 197271
|| | || | ||||| || ||||| || || | |||| || || | |||
Sbjct 16558802 CAATTGTGTGAGCGTTTGGCGATTTCGTACGTGGCTTCCTTTTCCAAAGTTTTCACCATT 16558861
Query 197272 AATCCCTCGCAATCTTCCTT 197291
|| ||||| |||| | ||||
Sbjct 16558862 AAACCCTCACAATTTCCCTT 16558881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 676711988112160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |