Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 8e-12 >seq3 Length=31381287 Score = 86.0 bits (94), Expect = 8e-12 Identities = 180/260 (69%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 197037 AAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTCGGGATTGTAACAGGC 197096 ||| || || || ||||| |||||| || | || || | | || ||| || || || Sbjct 16558627 AAATCCAGTTCCAATCTTGCAAATGCTTTGGAACTCCTCGCTTTCTTGATCATAGCAAGC 16558686 Query 197097 GAGTAAGAAAGCG-CCGTAGGTTCCCGTTCTCTTTCCCA---CCCCGTTGAAGCCTCCGA 197152 | | |||||| |||||||||||||| | |||||| ||| | | | || || | Sbjct 16558687 CAAGA-GAAAGCCTCCGTAGGTTCCCGTCCG-TTTCCCTTTGCCCAGATAA--CCCCCAA 16558742 Query 197153 TAACCACCAGATCCAGAGTGTCGCACACCCCT-TCCATGTAATCTTTCTTCAGTTTGAGC 197211 | ||||| ||||| ||||| |||| ||| || |||| ||| ||||| |||||||||||| Sbjct 16558743 TGACCACTAGATCGAGAGTATCGC-CACAACTGTCCAAGTAGTCTTTTTTCAGTTTGAGC 16558801 Query 197212 CAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATCATC 197271 || | || | ||||| || ||||| || || | |||| || || | ||| Sbjct 16558802 CAATTGTGTGAGCGTTTGGCGATTTCGTACGTGGCTTCCTTTTCCAAAGTTTTCACCATT 16558861 Query 197272 AATCCCTCGCAATCTTCCTT 197291 || ||||| |||| | |||| Sbjct 16558862 AAACCCTCACAATTTCCCTT 16558881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676711988112160