Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4 116 3e-21 seq7 96.9 3e-15 seq2 96.9 3e-15 >seq4 Length=12290766 Score = 116 bits (128), Expect = 3e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || ||||| || ||| || || || || |||||||| || | | | || Sbjct 488948 AGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGT 489007 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| ||||| ||||| |||| ||||||||||| | ||||| ||| ||| Sbjct 489008 CCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCC 489067 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | | ||||| | ||| ||||| | || Sbjct 489068 TTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTG 489127 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || |||| |||||| || ||||| ||||||||| Sbjct 489128 ATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCATCGTG 489169 >seq7 Length=16482863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || |||||| || || ||||| || || || | ||| Sbjct 10793397 AGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGA 10793456 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||| || ||||| || |||| || || ||||| | ||||| ||||| Sbjct 10793457 CCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCT 10793516 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || || || | | | || || | || || || | || Sbjct 10793517 TTGTCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTG 10793576 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||||| |||||||| || || ||||| ||||| Sbjct 10793577 ATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||||||| || || || || || ||||||||||| ||||| || || ||| |||| Sbjct 10793169 AGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGG 10793228 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || ||||| || |||| | ||| ||||| | ||||| ||||| Sbjct 10793229 CCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCT 10793288 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || || || | | || || || | || || |||| || Sbjct 10793289 TTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACTTCCAAAGTG 10793348 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || |||||||| ||||| || || ||||| Sbjct 10793349 ATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || |||||||| || |||||||||||||| || || || || | || Sbjct 10792713 AGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGC 10792772 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || || ||||| |||| | ||| ||||| | |||| ||| || Sbjct 10792773 CCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCT 10792832 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || || || ||| ||| | | | ||||| | || || |||| || Sbjct 10792833 TTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTG 10792892 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||||||||| || || || ||||| ||||| Sbjct 10792893 ATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || ||| || || || ||||||||||| || ||| | || Sbjct 10792941 AGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTACGG 10793000 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | || || || ||||| |||| || ||||| || | || | ||||| Sbjct 10793001 CCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCCTCT 10793060 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || | || || |||| || Sbjct 10793061 TTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGACTTCCAGGGTG 10793120 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| |||||| || ||||| ||||| Sbjct 10793121 ATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158 >seq2 Length=15265516 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || || || | || || | || || ||| || || || ||||||||||| | Sbjct 12970353 CGCCACCTCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGG 12970294 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || | || || | ||| || ||||| || || || || || ||||||| || Sbjct 12970293 AGAGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGG 12970234 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| ||||| || || |||||| ||| ||| | | || ||||||| ||| | Sbjct 12970233 GAATCCCCTCTTTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGA 12970174 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| | || || || || || |||| ||||| || ||||||||||| ||| Sbjct 12970173 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCATTGTG 12970121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380927933946486