Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq4 116 3e-21
seq7 96.9 3e-15
seq2 96.9 3e-15
>seq4
Length=12290766
Score = 116 bits (128), Expect = 3e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| || ||||| || ||| || || || || |||||||| || | | | ||
Sbjct 488948 AGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGT 489007
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| ||| ||||| ||||| |||| ||||||||||| | ||||| ||| |||
Sbjct 489008 CCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCC 489067
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||| || ||| ||| | | | ||||| | ||| ||||| | ||
Sbjct 489068 TTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTG 489127
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|| || || || |||| |||||| || ||||| |||||||||
Sbjct 489128 ATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCATCGTG 489169
>seq7
Length=16482863
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || |||||| || || ||||| || || || | |||
Sbjct 10793397 AGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGA 10793456
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||||||| || ||||| || |||| || || ||||| | ||||| |||||
Sbjct 10793457 CCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCT 10793516
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||| || || || | | | || || | || || || | ||
Sbjct 10793517 TTGTCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTG 10793576
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||||||||| |||||||| || || ||||| |||||
Sbjct 10793577 ATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|||||||| || || || || || ||||||||||| ||||| || || ||| ||||
Sbjct 10793169 AGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGG 10793228
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | ||| || ||||| || |||| | ||| ||||| | ||||| |||||
Sbjct 10793229 CCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCT 10793288
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||| || || || | | || || || | || || |||| ||
Sbjct 10793289 TTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACTTCCAAAGTG 10793348
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || |||||||| ||||| || || |||||
Sbjct 10793349 ATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| || |||||||| || |||||||||||||| || || || || | ||
Sbjct 10792713 AGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTGCGC 10792772
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | || || || ||||| |||| | ||| ||||| | |||| ||| ||
Sbjct 10792773 CCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCT 10792832
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || || || ||| ||| | | | ||||| | || || |||| ||
Sbjct 10792833 TTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTG 10792892
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| ||||||||||| || || || ||||| |||||
Sbjct 10792893 ATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || ||| || || || ||||||||||| || ||| | ||
Sbjct 10792941 AGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTACGG 10793000
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | || || || ||||| |||| || ||||| || | || | |||||
Sbjct 10793001 CCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCCTCT 10793060
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| || || | | | || || | || || |||| ||
Sbjct 10793061 TTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGACTTCCAGGGTG 10793120
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || |||| |||||| || ||||| |||||
Sbjct 10793121 ATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158
>seq2
Length=15265516
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || || || | || || | || || ||| || || || ||||||||||| |
Sbjct 12970353 CGCCACCTCTGAGTCTTAAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGG 12970294
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| || | || | || || | ||| || ||||| || || || || || ||||||| ||
Sbjct 12970293 AGAGGGTACGTCCATCCTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGG 12970234
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| ||||| || || |||||| ||| ||| | | || ||||||| ||| |
Sbjct 12970233 GAATCCCCTCTTTATCCTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGA 12970174
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||| | || || || || || |||| ||||| || ||||||||||| |||
Sbjct 12970173 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCATTGTG 12970121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380927933946486
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |