Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq5 134 3e-26
>seq5
Length=15459558
Score = 134 bits (148), Expect = 3e-26
Identities = 311/462 (67%), Gaps = 14/462 (3%)
Strand=Plus/Minus
Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190
|||||||| || | || | ||| ||||||| || || | ||||| || ||||
Sbjct 2624769 CAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGA 2624710
Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250
|| ||||| | || || ||| ||||||||||| | || || ||||||||||||
Sbjct 2624709 CCTGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAA 2624650
Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG-A 48309
|| || || || || || ||||| || | || || |||| ||||||||| |||
Sbjct 2624649 ATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTG-CTGTT 2624591
Query 48310 GATCCA-GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368
||||| | ||| |||||||| ||||||||||| | || |||| |||||| || ||
Sbjct 2624590 TATCCACAGCAAG-GCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCAT 2624532
Query 48369 GG---AAGAGCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGC 48423
| |||| || || || |||| | || | || || || || || | |
Sbjct 2624531 TGAACAAGAACTCCT-----TCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCT 2624477
Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483
||||||||| || || | || || |||||||| ||||||||||| ||| | || ||
Sbjct 2624476 GTACATCTCCGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTC 2624417
Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543
||| ||||| || | ||| ||||| | || || || ||||| || || || ||
Sbjct 2624416 GGTCACTTGCACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGA 2624357
Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTC 48585
|| || || || ||||| || || || ||| | ||| ||
Sbjct 2624356 GGCTGCGAAAAATGCAAGAACGTGCGAAATGAAGTAGCGTTC 2624315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931508556858880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |