Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5 134 3e-26 >seq5 Length=15459558 Score = 134 bits (148), Expect = 3e-26 Identities = 311/462 (67%), Gaps = 14/462 (3%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 |||||||| || | || | ||| ||||||| || || | ||||| || |||| Sbjct 2624769 CAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGA 2624710 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || || ||| ||||||||||| | || || |||||||||||| Sbjct 2624709 CCTGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAA 2624650 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG-A 48309 || || || || || || ||||| || | || || |||| ||||||||| ||| Sbjct 2624649 ATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTG-CTGTT 2624591 Query 48310 GATCCA-GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 ||||| | ||| |||||||| ||||||||||| | || |||| |||||| || || Sbjct 2624590 TATCCACAGCAAG-GCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCAT 2624532 Query 48369 GG---AAGAGCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGC 48423 | |||| || || || |||| | || | || || || || || | | Sbjct 2624531 TGAACAAGAACTCCT-----TCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCT 2624477 Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| || || | || || |||||||| ||||||||||| ||| | || || Sbjct 2624476 GTACATCTCCGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTC 2624417 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 ||| ||||| || | ||| ||||| | || || || ||||| || || || || Sbjct 2624416 GGTCACTTGCACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGA 2624357 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTC 48585 || || || || ||||| || || || ||| | ||| || Sbjct 2624356 GGCTGCGAAAAATGCAAGAACGTGCGAAATGAAGTAGCGTTC 2624315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931508556858880