Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5 134 3e-26 >seq5 Length=15459558 Score = 134 bits (148), Expect = 3e-26 Identities = 356/533 (67%), Gaps = 17/533 (3%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| | ||||| || ||||||||||| || || || ||||| || || |||||| | Sbjct 2624334 ACGTTCTTGCATTTTTCGCAGCCTCTGACGGAATCGTCAACGAAAACCTCGTCGAGAGGT 2624393 Query 25655 TCACCAGGGAAGTGC-AGT-ACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| | ||| |||| ||| || || || || || ||||| ||||| || || || Sbjct 2624394 TCAGCCAGGAGGTGCAAGTGAC--CGAAGCTCGCTGCTTTTACGGGTTCCAAATCGCTAT 2624451 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 ||||| | || || ||| |||| || | | | ||||||||| | || | Sbjct 2624452 TGAAAACATCCATTCGGAGATGTACAGCATGTTGATCGAAACGTACATTTCTGAGCCCCA 2624511 Query 25773 CGAGA--GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 |||| ||| || |||| ||| |||||| | ||| | | |||| |||||| Sbjct 2624512 GGAGAAGGAGTTC--TTGTTCAATGCGATCGAGACGCTGCCCTGTGTTAAGAAGAAGGCC 2624569 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 |||||| || |||||| |||||| ||| ||| || |||||||| || | || || Sbjct 2624570 GACTGGGCCTTGCTGTGGATAAACAGCAAGAACGCGACTTTTGGCGAACGAATCGTGGCG 2624629 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 ||||| || || || || || || ||| || ||||| | || |||||||| || Sbjct 2624630 TTTGCCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCTTTGCTTCGATTTTCTGGCTTAA- 2624688 Query 25951 CAGAAGGGGACC--ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 | | || | | ||||| || || |||||||| || || || |||||||||| Sbjct 2624689 -AAAGCGGAATCTTATGCCAGGTCTCACATTTTCCAATGAACTGATTTCGAGGGACGAGG 2624747 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTC 26068 | || || | ||||||||||| || | | | | |||||| | || || || || Sbjct 2624748 GCCTACATTGCGATTTTGCCTGTTTGATGTTCTC---TCACTTGGTGCAGAAGCCGTCCA 2624804 Query 26069 AAGAGACCG-TCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 |||| || | | | || || ||| |||| || || | ||||||||||| || Sbjct 2624805 AAGA-ACGGATTCAAAGCATTATCCAAGACGCGGTCAAAATCGAGAAGGAATT 2624856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928820626814080