Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq5 134 3e-26
>seq5
Length=15459558
Score = 134 bits (148), Expect = 3e-26
Identities = 356/533 (67%), Gaps = 17/533 (3%)
Strand=Plus/Plus
Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654
|||| | ||||| || ||||||||||| || || || ||||| || || |||||| |
Sbjct 2624334 ACGTTCTTGCATTTTTCGCAGCCTCTGACGGAATCGTCAACGAAAACCTCGTCGAGAGGT 2624393
Query 25655 TCACCAGGGAAGTGC-AGT-ACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
||| | ||| |||| ||| || || || || || ||||| ||||| || || ||
Sbjct 2624394 TCAGCCAGGAGGTGCAAGTGAC--CGAAGCTCGCTGCTTTTACGGGTTCCAAATCGCTAT 2624451
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772
||||| | || || ||| |||| || | | | ||||||||| | || |
Sbjct 2624452 TGAAAACATCCATTCGGAGATGTACAGCATGTTGATCGAAACGTACATTTCTGAGCCCCA 2624511
Query 25773 CGAGA--GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830
|||| ||| || |||| ||| |||||| | ||| | | |||| ||||||
Sbjct 2624512 GGAGAAGGAGTTC--TTGTTCAATGCGATCGAGACGCTGCCCTGTGTTAAGAAGAAGGCC 2624569
Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890
|||||| || |||||| |||||| ||| ||| || |||||||| || | || ||
Sbjct 2624570 GACTGGGCCTTGCTGTGGATAAACAGCAAGAACGCGACTTTTGGCGAACGAATCGTGGCG 2624629
Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950
||||| || || || || || || ||| || ||||| | || |||||||| ||
Sbjct 2624630 TTTGCCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCTTTGCTTCGATTTTCTGGCTTAA- 2624688
Query 25951 CAGAAGGGGACC--ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008
| | || | | ||||| || || |||||||| || || || ||||||||||
Sbjct 2624689 -AAAGCGGAATCTTATGCCAGGTCTCACATTTTCCAATGAACTGATTTCGAGGGACGAGG 2624747
Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTC 26068
| || || | ||||||||||| || | | | | |||||| | || || || ||
Sbjct 2624748 GCCTACATTGCGATTTTGCCTGTTTGATGTTCTC---TCACTTGGTGCAGAAGCCGTCCA 2624804
Query 26069 AAGAGACCG-TCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120
|||| || | | | || || ||| |||| || || | ||||||||||| ||
Sbjct 2624805 AAGA-ACGGATTCAAAGCATTATCCAAGACGCGGTCAAAATCGAGAAGGAATT 2624856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928820626814080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |