Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 >seq3 Length=31381287 Score = 95.1 bits (104), Expect = 1e-14 Identities = 429/671 (64%), Gaps = 18/671 (3%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || || || ||||| | |||||||| ||||||||||| || || ||||| || || || Sbjct 15583743 ACCCCGATTGGACCCATACCAGGACCACCACCTCCATGCGGTATGCAGAAGGTTTTGTGC 15583802 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || ||||| | || || | || || |||| ||| | || || ||||| Sbjct 15583803 AAGTTCAGATGGGAGACGTCACCGCCGTAATCACCAGGTCGGCACAATCCGACTTGTGCG 15583862 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || |||||||| || || ||||||||||| || | ||| | || | ||| | Sbjct 15583863 TTCATGTTGGCACCATCTAGGTAGACCTGACCACCGTTTTTATGGATAATATCACACACA 15583922 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 | | || || ||||| | |||| ||| ||||| || || ||||| || || ||| Sbjct 15583923 TCTGCGACCGTTTCCTCAAAAAGTCCATTAGTTGATGGGTAGGTGATCATCATGCACGAG 15583982 Query 138423 AGTTCAAATGTATTCATGATTGCTTTCTTCTCT---AGATCTTTGATGTCTATGTTGCCA 138479 || | | || || | | | |||| || ||||||| || || || ||| Sbjct 15583983 AG-ACGACTG--TTGAACTTCTCGGCCTTCGCTTTAAGATCTTCGACATCGATCGAACCA 15584039 Query 138480 TCAT-CATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATT 138538 |||| |||| | |||| | ||| ||| || ||||| ||||| || || || Sbjct 15584040 TCATGTTTCACTC-TGACTGGTTCAATCCGCATCCCGGCCATTTGGGCACTTGCTGGGTT 15584098 Query 138539 AGTTCCATGTGCTGACTCTGGTATCAGACATACATTTC---TTTTATCATCTCCTGATCC 138595 || ||||| || | | || |||| ||| || | | |||||||| ||| | | Sbjct 15584099 CGTCCCATGGGCACTCACAGGAATCAAACAAACGTCCCGATTTTTATCACCTCGGG---C 15584155 Query 138596 TTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGG 138655 || ||| || || || || ||| |||||||| ||||| || | || || || Sbjct 15584156 TTCATGGTAGCACTGAATGGCCCTCAGACCTGCATATTCACCTTGGGCGCCACTATTCGG 15584215 Query 138656 TTGTAA--TGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGTCATCT 138713 || || | || | | ||| | || ||||| |||| | ||||| | || | Sbjct 15584216 CTGGAAACTAATCTTG--TCATACCCAGTGATGGCACAAAGATCTTTCTCAAGCTCTGCA 15584273 Query 138714 ATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGTATGTGGATGCACGTTGGCAAAT 138773 | | || ||||| |||| || || || ||| | | ||||| | | | ||| Sbjct 15584274 AACAACTGGTGATACCCCAAAGTTTGATCCAAAGGCGCAAACGGATGAATATCAGTAAAG 15584333 Query 138774 TCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTACCA 138833 | || | || |||||||| |||| | || || ||||||||||||||| |||| Sbjct 15584334 TGTTTGAAGGAACAAGGCATCATCTCTGTCGTTGAGTTAAGTTTCATTGTGCAAGAACCA 15584393 Query 138834 AGTGGAACCAT 138844 || || | ||| Sbjct 15584394 AGCGGGATCAT 15584404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578983331566640