Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 140 4e-28 seq3 113 5e-20 >seq4 Length=12290766 Score = 140 bits (154), Expect = 4e-28 Identities = 910/1437 (63%), Gaps = 51/1437 (4%) Strand=Plus/Plus Query 75518 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA 75577 ||||| || ||| | || | | ||||| |||||| | | |||||||| || | ||| Sbjct 1758180 TCAGACGGGATTGTGCCCGTTTTGCGCGTTTTTAACAACTCCGCGCGCTACGTGGACCAA 1758239 Query 75578 GCGGGGCGTCGCAAG----GGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATAT 75633 | |||| | ||| ||| | ||| | ||| | || || |||||||||||||| Sbjct 1758240 GGGGGGAA-CAAAAGACCGGGGGCTTGCGCTATTTACCTCGAGCCTTGGCATGCCGATAT 1758298 Query 75634 CATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA-GAGAT 75691 |||| || | | || | || || || || || | || ||| | | | | || Sbjct 1758299 TTTGGATTTTTTAAACTTGAAGAA--AAACACGGGGAAGGAGCAGCTAAGGGCACGCGA- 1758355 Query 75692 CTCTTTTCATCCCT--GTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTC 75749 || | ||| || || ||||| || ||| | |||||| ||||| | | | | Sbjct 1758356 CT-TGTTCTTCGCTTTGTGGACGCCTGACTTGTTCATGCGCCGGGTGAAAAACGACGAGA 1758414 Query 75750 AATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGT 75809 ||||||| || | |||||| || || ||||||| || |||| ||| || |||| Sbjct 1758415 AATGGTCCCTGATGTGTCCACACCAGTCACCAGGCCTTGCCGATTGTTGGGGCGAAGAGT 1758474 Query 75810 TTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGC--GACTGT-ACCAG 75866 | ||| | ||| ||| || || || ||| | | ||| ||| || ||||| Sbjct 1758475 TCGAAAAATTGTACGAAAAATACGAGACTGACGGTCG---CTATGTTAGACAGTTACCAG 1758531 Query 75867 CCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGC 75926 | || |||||| |||||| | || ||| ||||||||| || || || |||| Sbjct 1758532 CGCGGGACGTTTGGCGCGCTATTTGCGTCTCCCAGGTGGAGACTGGCACCCCTTACATGC 1758591 Query 75927 TTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCT 75986 | ||||| || || ||||||| ||| || |||||| | ||||| || || |||| |||| Sbjct 1758592 TCTACAAAGACGCATGTAACAGGAAAAGCAACCAACAAAATTTAGGCACTATCAGGAGCA 1758651 Query 75987 CAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATT 76046 ||| | ||||||||||| | |||| ||| || || | || || || || | Sbjct 1758652 GCAATTTATGCACGGAAATAGTCGAGTTTACATCACCCGACGAAATCGCCGTCTGTAACT 1758711 Query 76047 TGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAA 76106 |||| ||||||||| | | || || || | || | || | || | | | | Sbjct 1758712 TGGCCTCAATCGCCGTAAACATGTTCGTGAAAGCGGACAGGAGCGGCTACGACTTTAACA 1758771 Query 76107 AACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATT 76166 | | | |||||||| || |||| | || ||| | ||| ||||||||| |||| Sbjct 1758772 AGTTGAAGGAAATCACCAAAGTTGTGGCAAAGAATTTGAACAAAGTCATTGATCTGAATT 1758831 Query 76167 TTTATCCCGTTG--AGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGG 76224 ||| || ||| ||| ||||| ||||| ||| |||| ||||| || | || | || Sbjct 1758832 ACTAT-CCTTTGCCAGA-GGCGCGTAAGTCGAATCTGCGCCACAGGCCGGTGGGAATTGG 1758889 Query 76225 TGTTCAAGGTCTCGCGGATGTATTTATT-TTGTGCCGCTACGCATTTGATTCAGATGAAG 76283 ||||| || || || |||| || ||| | ||| | | | |||||| || | Sbjct 1758890 GGTTCAGGGCCTGGCTGATGCGTTCATTCTCCTGCGAATGC-CTTTTGATAGCCCGGAGG 1758948 Query 76284 CCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTT 76343 | || | | || | || || ||||| | ||| ||| || ||||||| |||| Sbjct 1758949 CTAAAGCCCTAAACCGGCAAATTTTCGAAACGCTTTATTACGGCGCCTTGGAGGCTAGTT 1759008 Query 76344 GTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAG 76403 | ||| |||| ||| | || | |||||||| | ||| || || || | |||| Sbjct 1759009 GCGAACTGGCCGAAAAGTACGGCCCGTATGAGACTTATGAAGGGTCACCGGTCAGTCAAG 1759068 Query 76404 GGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACGACTGGGAT---- 76459 | || | |||| || ||||||| || | || | ||| | | |||||| Sbjct 1759069 GTGTCTTGCAGTACGACATGTGGG-GCGTCACTCCTA---CAAATTTG--TGGGATTGGT 1759122 Query 76460 --GTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAA 76517 | | | || || ||| | | ||| |||| || || | |||| |||| Sbjct 1759123 CCGATTTGAAAAAAAAAATCGCCAAATACGGTGTTCGCAATTCGCTACTTTTGGCTCCAA 1759182 Query 76518 TGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAA 76577 |||| || || || || || ||||| |||||||||||||||| ||||| ||||| Sbjct 1759183 TGCCCACGGCTTCGACTGCCCAAATTTTGGGTAATAATGAATCGACCGAACCGTACACTT 1759242 Query 76578 CAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCG 76637 | || ||||| |||| | | | || |||||| | || || ||||||| Sbjct 1759243 CTAATATCTATGTGAGGCGGGTGTTGTCTGGGGAGTTTCAAGTCGTGAATCAGCACCTGC 1759302 Query 76638 TCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---TCATGGTGA 76694 | || || | | ||| || || ||| | | |||||| ||| | || | || Sbjct 1759303 TGAAGGATTTGACTGAGAGGGGGCTTTGGGACGATACGATGAAGAATCAGATTATTGCGA 1759362 Query 76695 AAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACC 76754 | |||||| |||||||| || | | || || || ||| | || | || || Sbjct 1759363 A---TTATGGTTCGATTCAAAACATTCCGGGGATTCCCGACGATTTGAAACAACTGTATA 1759419 Query 76755 GCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGC- 76813 ||||| ||||| || | ||||| | | ||||| ||||| || ||| | || ||| Sbjct 1759420 AAACAGTCTGGGAGATTTCGCAGAAAGTTATTATTGATATGGCGGCTGATAGAGG-CGCG 1759478 Query 76814 TTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTC 76873 || ||||| || ||||| ||||| ||||||| | || ||| | | || Sbjct 1759479 TTTATTGACCAGAGTCAGTCGATGAA--TATTCATATTGCGGCC-CCGAATTATGGGGTC 1759535 Query 76874 ---TCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTAT 76927 ||||| |||||| | |||| |||| | |||| | || || || ||||||||| Sbjct 1759536 ATGTCTTCCATGCATTTCTACGGGTGGGATAAGGGTTTAAAGACAGGGATGTACTAT 1759592 >seq3 Length=31381287 Score = 113 bits (124), Expect = 5e-20 Identities = 242/357 (68%), Gaps = 11/357 (3%) Strand=Plus/Plus Query 177511 GCCGCACCCT-CCCATGTGATCTCCTTTCCAACCTCTTTGAAGCACATTTCAACAAACTG 177569 ||||| |||| |||| |||||||| || || | | |||| | |||||||||| Sbjct 28596741 GCCGCTCCCTTCCCACAGAATCTCCTTCCCCACGTGTCTGAAAGCCGCCTCAACAAACTC 28596800 Query 177570 CCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAG 177629 || |||| ||| |||||||| | || | || | || || | ||| || || || Sbjct 28596801 CCGCACACTGTGCGTCTCCCCGGAAGCTATGACGAAGTCGTCCGGCTCGGGCTGCTGCAG 28596860 Query 177630 CATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAG 177689 ||||||||||||||| || || |||||||||||||| |||||||| | | || || Sbjct 28596861 CATGAGCCACATGGCCTCCACGTAGTCCTTGGCATGGCCCCAGTCGCGCTTCGAGTCCAG 28596920 Query 177690 GTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTG--TTTGACGCCATC---A 177744 ||| || | ||||||| | || | | | | || | | |||| | | || Sbjct 28596921 GTTGCCTAATTCAAGG--CACTGAGTGAGC---CCCAGGTGGATTTTGGCCACTTCTCGG 28596975 Query 177745 GTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATT 177804 || || || ||||| ||| |||| |||| || |||||||||||||||||| Sbjct 28596976 GTGATTTTGCGCGTGACGAAGGTTTCACCACGTCGGGGGCTTTCGTGGTTGAAGAGGATG 28597035 Query 177805 CCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCG 177861 ||| |||||| |||| || || | ||| ||||| || |||| ||||| |||| Sbjct 28597036 CCGTTGCAGGCGAACATGCCGTAAGCTTCACGGTAGTTCACCACGATCCAGTAAGCG 28597092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596554074276160