Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq4 140 4e-28
seq3 113 5e-20
>seq4
Length=12290766
Score = 140 bits (154), Expect = 4e-28
Identities = 910/1437 (63%), Gaps = 51/1437 (4%)
Strand=Plus/Plus
Query 75518 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA 75577
||||| || ||| | || | | ||||| |||||| | | |||||||| || | |||
Sbjct 1758180 TCAGACGGGATTGTGCCCGTTTTGCGCGTTTTTAACAACTCCGCGCGCTACGTGGACCAA 1758239
Query 75578 GCGGGGCGTCGCAAG----GGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATAT 75633
| |||| | ||| ||| | ||| | ||| | || || ||||||||||||||
Sbjct 1758240 GGGGGGAA-CAAAAGACCGGGGGCTTGCGCTATTTACCTCGAGCCTTGGCATGCCGATAT 1758298
Query 75634 CATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA-GAGAT 75691
|||| || | | || | || || || || || | || ||| | | | | ||
Sbjct 1758299 TTTGGATTTTTTAAACTTGAAGAA--AAACACGGGGAAGGAGCAGCTAAGGGCACGCGA- 1758355
Query 75692 CTCTTTTCATCCCT--GTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTC 75749
|| | ||| || || ||||| || ||| | |||||| ||||| | | | |
Sbjct 1758356 CT-TGTTCTTCGCTTTGTGGACGCCTGACTTGTTCATGCGCCGGGTGAAAAACGACGAGA 1758414
Query 75750 AATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGT 75809
||||||| || | |||||| || || ||||||| || |||| ||| || ||||
Sbjct 1758415 AATGGTCCCTGATGTGTCCACACCAGTCACCAGGCCTTGCCGATTGTTGGGGCGAAGAGT 1758474
Query 75810 TTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGC--GACTGT-ACCAG 75866
| ||| | ||| ||| || || || ||| | | ||| ||| || |||||
Sbjct 1758475 TCGAAAAATTGTACGAAAAATACGAGACTGACGGTCG---CTATGTTAGACAGTTACCAG 1758531
Query 75867 CCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGC 75926
| || |||||| |||||| | || ||| ||||||||| || || || ||||
Sbjct 1758532 CGCGGGACGTTTGGCGCGCTATTTGCGTCTCCCAGGTGGAGACTGGCACCCCTTACATGC 1758591
Query 75927 TTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCT 75986
| ||||| || || ||||||| ||| || |||||| | ||||| || || |||| ||||
Sbjct 1758592 TCTACAAAGACGCATGTAACAGGAAAAGCAACCAACAAAATTTAGGCACTATCAGGAGCA 1758651
Query 75987 CAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATT 76046
||| | ||||||||||| | |||| ||| || || | || || || || |
Sbjct 1758652 GCAATTTATGCACGGAAATAGTCGAGTTTACATCACCCGACGAAATCGCCGTCTGTAACT 1758711
Query 76047 TGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAA 76106
|||| ||||||||| | | || || || | || | || | || | | | |
Sbjct 1758712 TGGCCTCAATCGCCGTAAACATGTTCGTGAAAGCGGACAGGAGCGGCTACGACTTTAACA 1758771
Query 76107 AACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATT 76166
| | | |||||||| || |||| | || ||| | ||| ||||||||| ||||
Sbjct 1758772 AGTTGAAGGAAATCACCAAAGTTGTGGCAAAGAATTTGAACAAAGTCATTGATCTGAATT 1758831
Query 76167 TTTATCCCGTTG--AGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGG 76224
||| || ||| ||| ||||| ||||| ||| |||| ||||| || | || | ||
Sbjct 1758832 ACTAT-CCTTTGCCAGA-GGCGCGTAAGTCGAATCTGCGCCACAGGCCGGTGGGAATTGG 1758889
Query 76225 TGTTCAAGGTCTCGCGGATGTATTTATT-TTGTGCCGCTACGCATTTGATTCAGATGAAG 76283
||||| || || || |||| || ||| | ||| | | | |||||| || |
Sbjct 1758890 GGTTCAGGGCCTGGCTGATGCGTTCATTCTCCTGCGAATGC-CTTTTGATAGCCCGGAGG 1758948
Query 76284 CCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTT 76343
| || | | || | || || ||||| | ||| ||| || ||||||| ||||
Sbjct 1758949 CTAAAGCCCTAAACCGGCAAATTTTCGAAACGCTTTATTACGGCGCCTTGGAGGCTAGTT 1759008
Query 76344 GTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAG 76403
| ||| |||| ||| | || | |||||||| | ||| || || || | ||||
Sbjct 1759009 GCGAACTGGCCGAAAAGTACGGCCCGTATGAGACTTATGAAGGGTCACCGGTCAGTCAAG 1759068
Query 76404 GGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACGACTGGGAT---- 76459
| || | |||| || ||||||| || | || | ||| | | ||||||
Sbjct 1759069 GTGTCTTGCAGTACGACATGTGGG-GCGTCACTCCTA---CAAATTTG--TGGGATTGGT 1759122
Query 76460 --GTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAA 76517
| | | || || ||| | | ||| |||| || || | |||| ||||
Sbjct 1759123 CCGATTTGAAAAAAAAAATCGCCAAATACGGTGTTCGCAATTCGCTACTTTTGGCTCCAA 1759182
Query 76518 TGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAA 76577
|||| || || || || || ||||| |||||||||||||||| ||||| |||||
Sbjct 1759183 TGCCCACGGCTTCGACTGCCCAAATTTTGGGTAATAATGAATCGACCGAACCGTACACTT 1759242
Query 76578 CAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCG 76637
| || ||||| |||| | | | || |||||| | || || |||||||
Sbjct 1759243 CTAATATCTATGTGAGGCGGGTGTTGTCTGGGGAGTTTCAAGTCGTGAATCAGCACCTGC 1759302
Query 76638 TCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---TCATGGTGA 76694
| || || | | ||| || || ||| | | |||||| ||| | || | ||
Sbjct 1759303 TGAAGGATTTGACTGAGAGGGGGCTTTGGGACGATACGATGAAGAATCAGATTATTGCGA 1759362
Query 76695 AAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACC 76754
| |||||| |||||||| || | | || || || ||| | || | || ||
Sbjct 1759363 A---TTATGGTTCGATTCAAAACATTCCGGGGATTCCCGACGATTTGAAACAACTGTATA 1759419
Query 76755 GCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGC- 76813
||||| ||||| || | ||||| | | ||||| ||||| || ||| | || |||
Sbjct 1759420 AAACAGTCTGGGAGATTTCGCAGAAAGTTATTATTGATATGGCGGCTGATAGAGG-CGCG 1759478
Query 76814 TTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTC 76873
|| ||||| || ||||| ||||| ||||||| | || ||| | | ||
Sbjct 1759479 TTTATTGACCAGAGTCAGTCGATGAA--TATTCATATTGCGGCC-CCGAATTATGGGGTC 1759535
Query 76874 ---TCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTAT 76927
||||| |||||| | |||| |||| | |||| | || || || |||||||||
Sbjct 1759536 ATGTCTTCCATGCATTTCTACGGGTGGGATAAGGGTTTAAAGACAGGGATGTACTAT 1759592
>seq3
Length=31381287
Score = 113 bits (124), Expect = 5e-20
Identities = 242/357 (68%), Gaps = 11/357 (3%)
Strand=Plus/Plus
Query 177511 GCCGCACCCT-CCCATGTGATCTCCTTTCCAACCTCTTTGAAGCACATTTCAACAAACTG 177569
||||| |||| |||| |||||||| || || | | |||| | ||||||||||
Sbjct 28596741 GCCGCTCCCTTCCCACAGAATCTCCTTCCCCACGTGTCTGAAAGCCGCCTCAACAAACTC 28596800
Query 177570 CCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAG 177629
|| |||| ||| |||||||| | || | || | || || | ||| || || ||
Sbjct 28596801 CCGCACACTGTGCGTCTCCCCGGAAGCTATGACGAAGTCGTCCGGCTCGGGCTGCTGCAG 28596860
Query 177630 CATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAG 177689
||||||||||||||| || || |||||||||||||| |||||||| | | || ||
Sbjct 28596861 CATGAGCCACATGGCCTCCACGTAGTCCTTGGCATGGCCCCAGTCGCGCTTCGAGTCCAG 28596920
Query 177690 GTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTG--TTTGACGCCATC---A 177744
||| || | ||||||| | || | | | | || | | |||| | | ||
Sbjct 28596921 GTTGCCTAATTCAAGG--CACTGAGTGAGC---CCCAGGTGGATTTTGGCCACTTCTCGG 28596975
Query 177745 GTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATT 177804
|| || || ||||| ||| |||| |||| || ||||||||||||||||||
Sbjct 28596976 GTGATTTTGCGCGTGACGAAGGTTTCACCACGTCGGGGGCTTTCGTGGTTGAAGAGGATG 28597035
Query 177805 CCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCG 177861
||| |||||| |||| || || | ||| ||||| || |||| ||||| ||||
Sbjct 28597036 CCGTTGCAGGCGAACATGCCGTAAGCTTCACGGTAGTTCACCACGATCCAGTAAGCG 28597092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596554074276160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |