Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq4 149 8e-30
seq5 93.3 5e-13
>seq4
Length=12290766
Score = 149 bits (164), Expect = 8e-30
Identities = 150/195 (77%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165
|||| ||||| || || || ||| | |||||| || ||| | | || || || ||
Sbjct 938651 AGAAACGCACGGATGATATTTCGTCATGGGACGCCGATTTTCTCAAAGTGGACCAAGGCA 938592
Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225
| | |||||| ||||||| || || || ||||| ||||||||| ||||||||| |
Sbjct 938591 CTTTGTTTGAGCTGATCCTGGCGGCGAATTACCTGGACATCAAGGGGCTGCTCGATGTGA 938532
Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285
|||||| | || ||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 938531 CTTGCAAGACAGTCGCCAACATGATCAAGGGCAAGGCCCCCGAGGAGATCCGCAAGACTT 938472
Query 1592286 TTAACATCAAGTACG 1592300
| ||||||||| |||
Sbjct 938471 TCAACATCAAGAACG 938457
>seq5
Length=15459558
Score = 93.3 bits (102), Expect = 5e-13
Identities = 146/204 (72%), Gaps = 5/204 (2%)
Strand=Plus/Minus
Query 869195 ATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 869254
|||| ||| ||| ||| | ||| || ||||| || ||||| || ||||| || ||
Sbjct 2624733 ATCAGTTCATTGGAAAATGTGAGACCTGGCATAAGATTCCGCTTTTTAAGCCAGAAAATC 2624674
Query 869255 GC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313
| ||| || ||||| ||||| || || || |||||||||||||| | | || || ||
Sbjct 2624673 GAAGCA-AAGCTGCCAGAGAAGAAAATCCCTTCGACGGCGGCAAACGCCACGATTCGTTC 2624615
Query 869314 GGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCT 869373
| |||| |||| | | | | |||| |||||| || |||||||||||||| ||| |
Sbjct 2624614 GCCAAA--AGTCGCGTTCTTGC-TGTTTATCCACAGCAAGGCCCAGTCGGCCTTCTTCTT 2624558
Query 869374 CACCGACGGCACCGTGTCGATGGC 869397
|| | |||| ||| ||||| ||
Sbjct 2624557 AACACAGGGCAGCGTCTCGATCGC 2624534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106968341329994
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |