Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 149 8e-30 seq5 93.3 5e-13 >seq4 Length=12290766 Score = 149 bits (164), Expect = 8e-30 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||| ||||| || || || ||| | |||||| || ||| | | || || || || Sbjct 938651 AGAAACGCACGGATGATATTTCGTCATGGGACGCCGATTTTCTCAAAGTGGACCAAGGCA 938592 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | | |||||| ||||||| || || || ||||| ||||||||| ||||||||| | Sbjct 938591 CTTTGTTTGAGCTGATCCTGGCGGCGAATTACCTGGACATCAAGGGGCTGCTCGATGTGA 938532 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | || ||||||||||||||||||||| | |||||||||||||||||||| | Sbjct 938531 CTTGCAAGACAGTCGCCAACATGATCAAGGGCAAGGCCCCCGAGGAGATCCGCAAGACTT 938472 Query 1592286 TTAACATCAAGTACG 1592300 | ||||||||| ||| Sbjct 938471 TCAACATCAAGAACG 938457 >seq5 Length=15459558 Score = 93.3 bits (102), Expect = 5e-13 Identities = 146/204 (72%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 869195 ATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 869254 |||| ||| ||| ||| | ||| || ||||| || ||||| || ||||| || || Sbjct 2624733 ATCAGTTCATTGGAAAATGTGAGACCTGGCATAAGATTCCGCTTTTTAAGCCAGAAAATC 2624674 Query 869255 GC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313 | ||| || ||||| ||||| || || || |||||||||||||| | | || || || Sbjct 2624673 GAAGCA-AAGCTGCCAGAGAAGAAAATCCCTTCGACGGCGGCAAACGCCACGATTCGTTC 2624615 Query 869314 GGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCT 869373 | |||| |||| | | | | |||| |||||| || |||||||||||||| ||| | Sbjct 2624614 GCCAAA--AGTCGCGTTCTTGC-TGTTTATCCACAGCAAGGCCCAGTCGGCCTTCTTCTT 2624558 Query 869374 CACCGACGGCACCGTGTCGATGGC 869397 || | |||| ||| ||||| || Sbjct 2624557 AACACAGGGCAGCGTCTCGATCGC 2624534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106968341329994