Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4 187 2e-42 seq7 86.0 5e-12 >seq4 Length=12290766 Score = 187 bits (206), Expect = 2e-42 Identities = 222/300 (74%), Gaps = 1/300 (0%) Strand=Plus/Plus Query 34355 ACTTGCGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGA 34414 |||| |||||||| ||||| || ||||| |||| || | | ||||| || || |||| Sbjct 3539439 ACTTCCGGATGAAGCCATCGAGTAGGTCTTGTAGTTTGCCCGCATCGTGCGATCCATTGA 3539498 Query 34415 CGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGT 34474 |||| |||| |||||||||| |||||| || || || ||||||| |||||| || |||| Sbjct 3539499 CGATAAATCTTTCGTTTTTGAAATCGAATTGAGTCTGAGCGCCCAACTCGCAGCCAAAGT 3539558 Query 34475 ACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGA 34534 |||| ||||| || ||| || || || || |||||||| | ||||| ||| || || | Sbjct 3539559 ACTTCGTCGGATAGGTGGGGGGTCGGCCTAGGGCCTTGGCCACTTCGGCCATATTAACAA 3539618 Query 34535 TGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGT 34594 |||| || ||||||||||| || || || || || ||||| | || ||||| |||| Sbjct 3539619 TGACCGTTTTGATGCCGTTACCTTTGCCCTCCACTTTGGCCATCAGCCGGGGCATCTTGT 3539678 Query 34595 AGCGGTAGAACGCGTCCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTG 34654 |||| || || | || || |||| || ||||| || | ||||| || | ||||| Sbjct 3539679 AGCGATAAAAGACATCGCTGACGCTGCGATTGACGTTGACGCTGCCCATGGTTG-TGGTG 3539737 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || |||||| | |||||||| ||||| || | || |||||| Sbjct 489165 ATGCAAATTTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCA 489106 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| ||| ||| ||||| |||||| | ||| |||||| Sbjct 489105 GACACCATCGAAAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCCGATCAA 489046 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | |||| ||||||||||||||||||||||| | || || | ||||||||| Sbjct 489045 CAGCGTTTGATTTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 488986 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAggggg 110499 || || || ||||| || | || | || || | |||||||| || Sbjct 488985 ATCCAGAAGGAATCCACCCTTCATTTAGTTTTGCGTCTGCGAGGTGG 488939 >seq7 Length=16482863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || |||||| | || ||||||||||| ||| | ||| || ||| Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || |||||| |||||||| || | || || ||| Sbjct 10793098 GATACAATTGAGAACGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAA 10793039 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | ||| || ||||| || || || | | | || | | |||||||| Sbjct 10793038 CAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAAT 10792979 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAggggg 110499 || || || ||||| || | ||| ||||||| | || ||||| || Sbjct 10792978 ATCCAGAAGGAATCCACTCTCCACTTGGTGTTGCGTCTCCGAGGTGG 10792932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412831124402426