Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq4 187 2e-42
seq7 86.0 5e-12
>seq4
Length=12290766
Score = 187 bits (206), Expect = 2e-42
Identities = 222/300 (74%), Gaps = 1/300 (0%)
Strand=Plus/Plus
Query 34355 ACTTGCGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGA 34414
|||| |||||||| ||||| || ||||| |||| || | | ||||| || || ||||
Sbjct 3539439 ACTTCCGGATGAAGCCATCGAGTAGGTCTTGTAGTTTGCCCGCATCGTGCGATCCATTGA 3539498
Query 34415 CGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGT 34474
|||| |||| |||||||||| |||||| || || || ||||||| |||||| || ||||
Sbjct 3539499 CGATAAATCTTTCGTTTTTGAAATCGAATTGAGTCTGAGCGCCCAACTCGCAGCCAAAGT 3539558
Query 34475 ACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGA 34534
|||| ||||| || ||| || || || || |||||||| | ||||| ||| || || |
Sbjct 3539559 ACTTCGTCGGATAGGTGGGGGGTCGGCCTAGGGCCTTGGCCACTTCGGCCATATTAACAA 3539618
Query 34535 TGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGT 34594
|||| || ||||||||||| || || || || || ||||| | || ||||| ||||
Sbjct 3539619 TGACCGTTTTGATGCCGTTACCTTTGCCCTCCACTTTGGCCATCAGCCGGGGCATCTTGT 3539678
Query 34595 AGCGGTAGAACGCGTCCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTG 34654
|||| || || | || || |||| || ||||| || | ||||| || | |||||
Sbjct 3539679 AGCGATAAAAGACATCGCTGACGCTGCGATTGACGTTGACGCTGCCCATGGTTG-TGGTG 3539737
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || || |||||| | |||||||| ||||| || | || ||||||
Sbjct 489165 ATGCAAATTTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCA 489106
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || ||| ||| ||| ||||| |||||| | ||| ||||||
Sbjct 489105 GACACCATCGAAAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCCGATCAA 489046
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | | |||| ||||||||||||||||||||||| | || || | |||||||||
Sbjct 489045 CAGCGTTTGATTTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 488986
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAggggg 110499
|| || || ||||| || | || | || || | |||||||| ||
Sbjct 488985 ATCCAGAAGGAATCCACCCTTCATTTAGTTTTGCGTCTGCGAGGTGG 488939
>seq7
Length=16482863
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || || |||||| | || ||||||||||| ||| | ||| || |||
Sbjct 10793158 ATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCT 10793099
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | || || |||||| |||||||| || | || || |||
Sbjct 10793098 GATACAATTGAGAACGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAA 10793039
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|||||| | || | ||| || ||||| || || || | | | || | | ||||||||
Sbjct 10793038 CAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAAT 10792979
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAggggg 110499
|| || || ||||| || | ||| ||||||| | || ||||| ||
Sbjct 10792978 ATCCAGAAGGAATCCACTCTCCACTTGGTGTTGCGTCTCCGAGGTGG 10792932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412831124402426
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |