Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq4 147 3e-29
seq5 122 1e-21
seq2 109 9e-18
seq1577 87.8 3e-11
seq1356 87.8 3e-11
>seq4
Length=12290766
Score = 147 bits (162), Expect = 3e-29
Identities = 150/196 (77%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625
|| || ||||| || || |||||| | |||||| | ||| | | || |||||| |
Sbjct 938652 GAGAAACGCACGGATGATATTTCGTCATGGGACGCCGATTTTCTCAAAGTGGACCAAGGC 938593
Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685
|| | |||||| ||||||| || || || ||||| ||||||||| || |||||| ||
Sbjct 938592 ACTTTGTTTGAGCTGATCCTGGCGGCGAATTACCTGGACATCAAGGGGCTGCTCGATGTG 938533
Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745
|||||||| || |||||| | |||||||||||| | |||||||| |||||||||||
Sbjct 938532 ACTTGCAAGACAGTCGCCAACATGATCAAGGGCAAGGCCCCCGAGGAGATCCGCAAGACT 938473
Query 2035746 TTTAACATCAAGTACG 2035761
|| ||||||||| |||
Sbjct 938472 TTCAACATCAAGAACG 938457
>seq5
Length=15459558
Score = 122 bits (134), Expect = 1e-21
Identities = 216/314 (69%), Gaps = 7/314 (2%)
Strand=Plus/Minus
Query 794356 ATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 794415
|||| ||| ||| ||| ||| || ||||| || ||||| || ||||| || ||
Sbjct 2624733 ATCAGTTCATTGGAAAATGTGAGACCTGGCATAAGATTCCGCTTTTTAAGCCAGAAAATC 2624674
Query 794416 GCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCG 794475
| | || ||||| ||||| || || || |||||||||||||| | |||| || |||
Sbjct 2624673 GAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCG 2624614
Query 794476 GCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCC 794533
||||||| || |||| |||| |||||| || ||||| || ||||| |||
Sbjct 2624613 CCAAAAGT-----CGCGTTCTTGCTGTTTATCCACAGCAAGGCCCAGTCGGCCTTCTTCT 2624559
Query 794534 TCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGA 794593
| || |||||| ||| ||||| || || | | |||||||| || || |
Sbjct 2624558 TAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAACTCCTTCTCCTGGGGCTCAGAAA 2624499
Query 794594 CGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGA 794653
||| || ||||| | | ||| |||| || ||||||||||| || ||||| ||||
Sbjct 2624498 TGTACGTTTCGATCAACATGCTGTACATCTCCGAATGGATGTTTTCAATAGCGATTTGGA 2624439
Query 794654 AGCCATAAAAGCAG 794667
| || |||||||||
Sbjct 2624438 ACCCGTAAAAGCAG 2624425
>seq2
Length=15265516
Score = 109 bits (120), Expect = 9e-18
Identities = 171/242 (71%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||| || |||||| ||| || |||
Sbjct 14892792 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCATGTTTGGCCAATTCTCCAGGCA 14892851
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||| || || || || || || | | || ||| ||| ||||||||| || |
Sbjct 14892852 GAAGCAGGCGAACCGCTGTTTGAATTTCCCTGCTGGTGATGGTGGAGCGCTTGTT-GTAC 14892910
Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648
| |||| || || || | |||||| || | || || || || | ||||
Sbjct 14892911 TGAGCCAAATGGGAAGCTTCCATCGTGATGCGTTCAAAAATATCATTCACGTAGCTGTTC 14892970
Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
||||| ||| | |||| |||| || || ||||| || |||||||| || ||||||
Sbjct 14892971 ATGATGTTCATAGCTTTGCTGGAAATTCCAGTATCGGGATGAACCTGCTTCAGAACCTTG 14893030
Query 1485709 TA 1485710
||
Sbjct 14893031 TA 14893032
>seq1577
Length=22076
Score = 87.8 bits (96), Expect = 3e-11
Identities = 165/243 (68%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||| ||||||||||| |||||||| || ||||| |||||| | |||| ||| || |||
Sbjct 13453 TGTATTTGGTGACGGCTTTGGTACCTTCAGAGACTGCGTGCTTTGCCAATTCACCAGGCA 13512
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || || || || || || || || ||| | ||||| ||||||||
Sbjct 13513 ACAAGAGACGAACCGCTGTTTGAATTTCCCGGCTCGTAATCGTCGAACGCTTGTTGTAAT 13572
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||| || || || || | | |||| || || | || || || || || |||||
Sbjct 13573 GCGCAAGACGAGAAGCTTCAGCGGCGATCCGTTCAAAGATATCATTAACGAAACTGTTCA 13632
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| ||| | || || || |||||||| || ||||| | ||||| |
Sbjct 13633 TGATGCTCATCGCCTTGCTCGAAATACCGGTATCGGGGTGTACTTGCTTCAATACCTTAT 13692
Query 1485710 AAA 1485712
|||
Sbjct 13693 AAA 13695
Score = 87.8 bits (96), Expect = 3e-11
Identities = 165/243 (68%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||| ||||||||||| |||||||| || ||||| |||||| | |||| ||| || |||
Sbjct 19905 TGTATTTGGTGACGGCTTTGGTACCTTCAGAGACTGCGTGCTTTGCCAATTCACCAGGCA 19846
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || || || || || || || || ||| | ||||| ||||||||
Sbjct 19845 ACAAGAGACGAACCGCTGTTTGAATTTCCCGGCTCGTAATCGTCGAACGCTTGTTGTAAT 19786
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||| || || || || | | |||| || || | || || || || || |||||
Sbjct 19785 GCGCAAGACGAGAAGCTTCAGCGGCGATCCGTTCAAAGATATCATTAACGAAACTGTTCA 19726
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| ||| | || || || |||||||| || ||||| | ||||| |
Sbjct 19725 TGATGCTCATCGCCTTGCTCGAAATACCGGTATCGGGGTGTACTTGCTTCAATACCTTAT 19666
Query 1485710 AAA 1485712
|||
Sbjct 19665 AAA 19663
>seq1356
Length=1306
Score = 87.8 bits (96), Expect = 3e-11
Identities = 165/243 (68%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||| ||||||||||| |||||||| || ||||| |||||| | |||| ||| || |||
Sbjct 66 TGTATTTGGTGACGGCTTTGGTACCTTCAGAGACTGCGTGCTTTGCCAATTCACCAGGCA 125
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || || || || || || || || ||| | ||||| ||||||||
Sbjct 126 ACAAGAGACGAACCGCTGTTTGAATTTCCCGGCTCGTAATCGTCGAACGCTTGTTGTAAT 185
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||| || || || || | | |||| || || | || || || || || |||||
Sbjct 186 GCGCAAGACGAGAAGCTTCAGCGGCGATCCGTTCAAAGATATCATTAACGAAACTGTTCA 245
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| ||| | || || || |||||||| || ||||| | ||||| |
Sbjct 246 TGATGCTCATCGCCTTGCTCGAAATACCGGTATCGGGGTGTACTTGCTTCAATACCTTAT 305
Query 1485710 AAA 1485712
|||
Sbjct 306 AAA 308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916024928163998
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |