Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 147 3e-29 seq5 122 1e-21 seq2 109 9e-18 seq1577 87.8 3e-11 seq1356 87.8 3e-11 >seq4 Length=12290766 Score = 147 bits (162), Expect = 3e-29 Identities = 150/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || || ||||| || || |||||| | |||||| | ||| | | || |||||| | Sbjct 938652 GAGAAACGCACGGATGATATTTCGTCATGGGACGCCGATTTTCTCAAAGTGGACCAAGGC 938593 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || | |||||| ||||||| || || || ||||| ||||||||| || |||||| || Sbjct 938592 ACTTTGTTTGAGCTGATCCTGGCGGCGAATTACCTGGACATCAAGGGGCTGCTCGATGTG 938533 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 |||||||| || |||||| | |||||||||||| | |||||||| ||||||||||| Sbjct 938532 ACTTGCAAGACAGTCGCCAACATGATCAAGGGCAAGGCCCCCGAGGAGATCCGCAAGACT 938473 Query 2035746 TTTAACATCAAGTACG 2035761 || ||||||||| ||| Sbjct 938472 TTCAACATCAAGAACG 938457 >seq5 Length=15459558 Score = 122 bits (134), Expect = 1e-21 Identities = 216/314 (69%), Gaps = 7/314 (2%) Strand=Plus/Minus Query 794356 ATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 794415 |||| ||| ||| ||| ||| || ||||| || ||||| || ||||| || || Sbjct 2624733 ATCAGTTCATTGGAAAATGTGAGACCTGGCATAAGATTCCGCTTTTTAAGCCAGAAAATC 2624674 Query 794416 GCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCG 794475 | | || ||||| ||||| || || || |||||||||||||| | |||| || ||| Sbjct 2624673 GAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCG 2624614 Query 794476 GCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCC 794533 ||||||| || |||| |||| |||||| || ||||| || ||||| ||| Sbjct 2624613 CCAAAAGT-----CGCGTTCTTGCTGTTTATCCACAGCAAGGCCCAGTCGGCCTTCTTCT 2624559 Query 794534 TCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGA 794593 | || |||||| ||| ||||| || || | | |||||||| || || | Sbjct 2624558 TAACACAGGGCAGCGTCTCGATCGCATTGAACAAGAACTCCTTCTCCTGGGGCTCAGAAA 2624499 Query 794594 CGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGA 794653 ||| || ||||| | | ||| |||| || ||||||||||| || ||||| |||| Sbjct 2624498 TGTACGTTTCGATCAACATGCTGTACATCTCCGAATGGATGTTTTCAATAGCGATTTGGA 2624439 Query 794654 AGCCATAAAAGCAG 794667 | || ||||||||| Sbjct 2624438 ACCCGTAAAAGCAG 2624425 >seq2 Length=15265516 Score = 109 bits (120), Expect = 9e-18 Identities = 171/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||| || |||||| ||| || ||| Sbjct 14892792 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCATGTTTGGCCAATTCTCCAGGCA 14892851 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| || || || || || || | | || ||| ||| ||||||||| || | Sbjct 14892852 GAAGCAGGCGAACCGCTGTTTGAATTTCCCTGCTGGTGATGGTGGAGCGCTTGTT-GTAC 14892910 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||| || || || | |||||| || | || || || || | |||| Sbjct 14892911 TGAGCCAAATGGGAAGCTTCCATCGTGATGCGTTCAAAAATATCATTCACGTAGCTGTTC 14892970 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | |||| |||| || || ||||| || |||||||| || |||||| Sbjct 14892971 ATGATGTTCATAGCTTTGCTGGAAATTCCAGTATCGGGATGAACCTGCTTCAGAACCTTG 14893030 Query 1485709 TA 1485710 || Sbjct 14893031 TA 14893032 >seq1577 Length=22076 Score = 87.8 bits (96), Expect = 3e-11 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||| |||||||| || ||||| |||||| | |||| ||| || ||| Sbjct 13453 TGTATTTGGTGACGGCTTTGGTACCTTCAGAGACTGCGTGCTTTGCCAATTCACCAGGCA 13512 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || || || || || ||| | ||||| |||||||| Sbjct 13513 ACAAGAGACGAACCGCTGTTTGAATTTCCCGGCTCGTAATCGTCGAACGCTTGTTGTAAT 13572 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || || || || | | |||| || || | || || || || || ||||| Sbjct 13573 GCGCAAGACGAGAAGCTTCAGCGGCGATCCGTTCAAAGATATCATTAACGAAACTGTTCA 13632 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| | || || || |||||||| || ||||| | ||||| | Sbjct 13633 TGATGCTCATCGCCTTGCTCGAAATACCGGTATCGGGGTGTACTTGCTTCAATACCTTAT 13692 Query 1485710 AAA 1485712 ||| Sbjct 13693 AAA 13695 Score = 87.8 bits (96), Expect = 3e-11 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||| |||||||| || ||||| |||||| | |||| ||| || ||| Sbjct 19905 TGTATTTGGTGACGGCTTTGGTACCTTCAGAGACTGCGTGCTTTGCCAATTCACCAGGCA 19846 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || || || || || ||| | ||||| |||||||| Sbjct 19845 ACAAGAGACGAACCGCTGTTTGAATTTCCCGGCTCGTAATCGTCGAACGCTTGTTGTAAT 19786 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || || || || | | |||| || || | || || || || || ||||| Sbjct 19785 GCGCAAGACGAGAAGCTTCAGCGGCGATCCGTTCAAAGATATCATTAACGAAACTGTTCA 19726 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| | || || || |||||||| || ||||| | ||||| | Sbjct 19725 TGATGCTCATCGCCTTGCTCGAAATACCGGTATCGGGGTGTACTTGCTTCAATACCTTAT 19666 Query 1485710 AAA 1485712 ||| Sbjct 19665 AAA 19663 >seq1356 Length=1306 Score = 87.8 bits (96), Expect = 3e-11 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||| |||||||| || ||||| |||||| | |||| ||| || ||| Sbjct 66 TGTATTTGGTGACGGCTTTGGTACCTTCAGAGACTGCGTGCTTTGCCAATTCACCAGGCA 125 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || || || || || ||| | ||||| |||||||| Sbjct 126 ACAAGAGACGAACCGCTGTTTGAATTTCCCGGCTCGTAATCGTCGAACGCTTGTTGTAAT 185 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || || || || | | |||| || || | || || || || || ||||| Sbjct 186 GCGCAAGACGAGAAGCTTCAGCGGCGATCCGTTCAAAGATATCATTAACGAAACTGTTCA 245 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| | || || || |||||||| || ||||| | ||||| | Sbjct 246 TGATGCTCATCGCCTTGCTCGAAATACCGGTATCGGGGTGTACTTGCTTCAATACCTTAT 305 Query 1485710 AAA 1485712 ||| Sbjct 306 AAA 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916024928163998