Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7 118 7e-22 seq2 100 2e-16 >seq7 Length=16482863 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || ||||| | || |||| ||||| |||| |||||||| ||||| || || || Sbjct 10793844 CCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAG 10793903 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | ||| |||| || ||||| || ||||| ||||||| || ||| |||||| | || Sbjct 10793904 AGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793963 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||| ||||| || | || || |||||| | | |||| || | ||||| Sbjct 10793964 ATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGACT 10794023 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || ||||| || || || | |||||| || |||||||||||| Sbjct 10794024 TCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCATG 10794071 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | || |||| ||||| |||| |||||||| ||||| || || || Sbjct 10794072 CCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 10794131 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | |||| | || || ||||| || || ||||| |||| || || || ||| | || Sbjct 10794132 AAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 10794191 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || ||||||| | |||| ||| || ||| || Sbjct 10794192 ATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACT 10794251 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || |||||||| || ||||| ||||| || ||||| ||||| Sbjct 10794252 TCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| |||| |||| ||| | || |||||||| ||||| ||||| || Sbjct 10794300 CCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAC 10794359 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | |||| | || || ||||| || || |||||||||| |||||||||||| | || Sbjct 10794360 AAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGG 10794419 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || ||||||| | | || | || || |||||| Sbjct 10794420 ATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACC 10794479 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| ||||| || || || | ||||| || ||||||||||| Sbjct 10794480 TCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || ||||| ||||||||||| ||| ||||| |||| || ||||| || || || ||| Sbjct 10792740 TCTTTTTGAATATTATAGTCCGACAGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAG 10792799 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| | ||||| ||| | || | || || || || | ||||| ||| || || Sbjct 10792800 ATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTATCCTGGATTTTAGCTTTAAC--AT 10792857 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || || || || || | || || ||||||||||| | |||||| | Sbjct 10792858 TCTCAATTGTGTCTGAGGGTTCTACTTCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCA 10792917 Query 34965 CAAAGATCTGCATG 34978 | || || |||||| Sbjct 10792918 CGAAAATTTGCATG 10792931 >seq2 Length=15265516 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||||| |||| |||||||| || || || || || ||| | || |||| || Sbjct 12970333 ACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCATCCTCG 12970274 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || || || ||||||||||| || |||||||| || | || | |||||| || || | Sbjct 12970273 AGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCCTGA 12970214 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 || || ||| || || || || | || | |||||| |||| ||| ||||||| Sbjct 12970213 ATCTTAGCTTTCAC--ATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGTCT 12970156 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || ||||| || || || |||||||| Sbjct 12970155 TGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325684535748758