Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq7 161 1e-34
seq4 161 1e-34
seq2 93.3 4e-14
>seq7
Length=16482863
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|||||||| | |||||| |||||||| | || ||||||||||| || || || || |
Sbjct 10792704 CCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGAC 10792763
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| | |||||||||||||| |||||| |||||| | |||||||| |||||
Sbjct 10792764 AGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 10792823
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
||||||||||| || ||||| ||| | | || | ||||||| ||||||||||
Sbjct 10792824 ATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACT 10792883
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | ||| | |||||| || ||||| || || ||||| ||||||||
Sbjct 10792884 TCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
|||||| | | ||||||||| || |||| || ||||| || || ||||||||||||
Sbjct 10794071 GCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 10794130
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
|| |||| ||||||||||||||||||||| | |||| ||| || ||||| |||||
Sbjct 10794131 CAAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGG 10794190
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
||||| || ||||| || || ||| | | || | ||| || | ||| || ||
Sbjct 10794191 GATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAAC 10794250
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
||| | ||| | |||||||| || | ||| || ||||| |||||||||
Sbjct 10794251 TTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCATA 10794299
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
||| ||||| | ||||| ||||| || | ||| ||||||||||| |||||||| |||
Sbjct 10793159 GCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGA 10793218
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
| || | |||||||| ||||| || || |||||| | |||||||| || ||
Sbjct 10793219 GAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGG 10793278
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|| || |||||||| |||||| || | | ||| | ||||| | ||||||||
Sbjct 10793279 AATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTAC 10793338
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
||| | ||| | |||||| || ||||| || |||||||| ||||||||
Sbjct 10793339 TTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
||| |||| |||||||| || || |||| || ||||| || || |||||||||||
Sbjct 10793843 GCCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGA 10793902
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
| || | | ||||| |||||||| || ||| |||||| | ||| || || || ||
Sbjct 10793903 GAGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGG 10793962
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|| ||||| || || ||| || || | | ||| | |||||| | ||||| ||
Sbjct 10793963 GATCCCTTCCTTATCCTGAATCTTAGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGAC 10794022
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
||| | ||| | || || || ||||| || || ||||| || |||||
Sbjct 10794023 TTCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCAT 10794070
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258
|||||| || || | || ||||| || || |||||||| || || |||| |||
Sbjct 10794314 CAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCCGTC 10794373
Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318
|||||||||||| ||||| |||||| ||||||||| || || || || ||||| |||||
Sbjct 10794374 TTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTC 10794433
Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378
|| || ||| | | ||| | || || | ||| || || || | || | ||
Sbjct 10794434 CTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGT 10794493
Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| || ||||| || || ||||| || |||||
Sbjct 10794494 TTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
||| ||||| | |||||| || || || | || ||||||||||| || ||||| |||
Sbjct 10793615 GCCACCTCGGAGACGCAACACCAAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGA 10793674
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
| || | |||||| |||||||| ||||| |||||| | ||| || || || ||
Sbjct 10793675 AAGAGTACGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGG 10793734
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|| ||||| ||||| || || || | | || | || || | ||||| ||
Sbjct 10793735 GATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGAC 10793794
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | || | |||||||| |||| ||||| ||||| ||||||||
Sbjct 10793795 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAAATTTGCAT 10793842
>seq4
Length=12290766
Score = 161 bits (178), Expect = 1e-34
Identities = 174/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| ||||| | ||||||||||||||||| || ||||| || || |||||||||||| |
Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998
Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
| |||| || | || || || |||||||| ||| | |||| ||| || |||||||| ||
Sbjct 488999 AAAGTGCGTCCA-TCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGG 489057
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|||||||| ||||| |||||| ||| | | ||| | ||||||| || || ||
Sbjct 489058 AATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGAC 489117
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||| ||| | ||||||||||||| ||||| ||||| ||||||||
Sbjct 489118 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
>seq2
Length=15265516
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 137200 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTC 137258
||||||| |||| || ||||| || || || ||||||||| | || | || | ||
Sbjct 12970336 AAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCA-TC 12970278
Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318
||||| ||||| || || |||| |||||||||||||| || || || || ||||| ||
Sbjct 12970277 CTCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATC 12970218
Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378
||| || ||| | | || | || |||| || || || |||| || | ||
Sbjct 12970217 CTGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGT 12970158
Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||||| |||| ||||| ||||| || |||||
Sbjct 12970157 CTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488531285642400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |