Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq4 221 1e-52
seq7 111 2e-19
seq5 109 5e-19
seq2 100 3e-16
>seq4
Length=12290766
Score = 221 bits (244), Expect = 1e-52
Identities = 683/1043 (65%), Gaps = 34/1043 (3%)
Strand=Plus/Minus
Query 147959 ATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGACATGAG 148018
||||||||| || ||||| | ||| | ||| ||||| |||| || |||||||
Sbjct 1759592 ATAGTACATCCCTGTCTTTAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACATGAC 1759533
Query 148019 CGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAATGAACGCGCC 148078
| || ||||| || | | | ||| | |||||| ||||||||||| ||||||||
Sbjct 1759532 CCCATAATTCGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCC 1759473
Query 148079 ACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCCGTCTTGTACA 148137
| ||||| ||||| ||||| | | |||| | | ||||||||| | || || ||||
Sbjct 1759472 TCTATCAGCCGCCATATCAAT-AATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACA 1759414
Query 148138 GCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAA 148197
| | || | || |||||||| || ||| || | ||| || | ||||| ||
Sbjct 1759413 GTTGTTTCAAATCGTCGGGAATCCCCGGAATGTTTTGAATCGAACCATAATTCGCAATAA 1759354
Query 148198 TCTGATTGCGCA---TTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATCAGAT 148254
||||||| || | |||||| | || ||| ||| || | | ||| |
Sbjct 1759353 TCTGATTCTTCATCGTATCGTCC---CAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGT 1759297
Query 148255 ACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAA 148314
||||||||| || |||||||| || | | ||| |||| || ||| | || ||
Sbjct 1759296 GCTGATTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGT 1759237
Query 148315 ACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACG 148374
||||||| ||| || || || |||||||| || || |||| ||||||||||| |
Sbjct 1759236 ACGGTTCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAG 1759177
Query 148375 CTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGT 148434
| | || ||||| ||||| | |||| || ||||| |||| | | | ||| |
Sbjct 1759176 CCAAAAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAAT 1759117
Query 148435 CCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGG 148494
|||| | | || || ||| ||||||||||||||||| | || | || | |
Sbjct 1759116 CCCACAAATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCG 1759057
Query 148495 GGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGA 148554
| || || || | ||||| |||| | | ||||||||||| || ||||| |
Sbjct 1759056 GTGACCCTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCA 1758997
Query 148555 GCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGC----GCCGCCGACTCG 148610
|||||||| |||| ||| ||| |||||||| ||| || || ||| ||| |
Sbjct 1758996 AGGCGCCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAG-GGCTTTAGCCTCCG---GG 1758941
Query 148611 CTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCA 148670
|| || | ||||| ||||| | | ||||| || || |||||||| || || | ||
Sbjct 1758940 CTATCAAAAGGCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCC 1758881
Query 148671 ATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGCGGATAGTGGTTGCGGTC 148729
| |||| ||| | || || ||||| |||| | | ||||||| || | ||
Sbjct 1758880 ACCGGCCTGTGGCGCAGATTCGACTTACGCGC-CTCTGGCAAAGGATAGTAATTCAGATC 1758822
Query 148730 GATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATC 148789
|||| |||| | ||| |||| || || || ||| || | | ||| ||
Sbjct 1758821 AATGACTTTGTTCAAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTC 1758762
Query 148790 GTA------CTTGTCATCT---ACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCA 148840
||| | |||| || |||| ||| ||| |||||||| ||||| | || ||
Sbjct 1758761 GTAGCCGCTCCTGTCCGCTTTCACGA-ACAT--GTTTACGGCGATTGAGGCCAAGTTACA 1758705
Query 148841 CACGGCCGTCTCATCCGGGGCGCTGT--ACTCTACGATCTCGGCGCACAGATTGCTGCAT 148898
||||| | || || ||| | ||| |||| || || || | ||| | ||||||||
Sbjct 1758704 GACGGCGATTTCGTC--GGGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTC 1758647
Query 148899 TTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATG 148958
|||| ||| | || | ||| ||||| || ||||| || ||||| ||||| ||||||
Sbjct 1758646 CTGATAGTGCCTAAATTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATG 1758587
Query 148959 TACGGTCCGCCAGTTTCCACCTG 148981
|| || |||||| ||||||||
Sbjct 1758586 TAAGGGGTGCCAGTCTCCACCTG 1758564
Score = 131 bits (144), Expect = 2e-25
Identities = 157/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | |||||| || ||||| || ||||||||| || ||| | | | ||||| ||
Sbjct 488960 AAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCA-TCCTCCAG 489018
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| || ||||| |||| | ||||| || ||||| || |||||||||||||| |||
Sbjct 489019 CTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTC-CTGAA 489077
Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| || |||| | || | ||||| | ||||| || || | |||| ||| ||||
Sbjct 489078 TTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGC 489137
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||||||||||| |||||||| |||||
Sbjct 489138 CGGTCAGAGTTTTCACGAAAATTTGCAT 489165
>seq7
Length=16482863
Score = 111 bits (122), Expect = 2e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | |||||| || ||||| || ||||||||| || ||| ||| |||||
Sbjct 10794093 AAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCGAGT 10794152
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|| || || ||| |||| | ||||| || || ||||||||||| |||||||| ||||
Sbjct 10794153 TGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATC 10794212
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| |||| | ||| | ||| || | |||||| || || | |||| ||| |||||
Sbjct 10794213 TTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATGGTCTTGCCA 10794272
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || || || ||||| || |||||
Sbjct 10794273 GTGAGTGTCTTAACGAAGATTTGCAT 10794298
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| || || ||||| || ||||| || || ||| ||| ||||| || |||||
Sbjct 10794330 GTCGATTCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCCGTCTTCGAGTTGTTTGCCA 10794389
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | || |||||||| || ||||| ||||||||||| |||||| |||
Sbjct 10794390 GCGAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGGATCTTAGCTTTG 10794449
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || | || |||| |||||| || || | ||||| |||||| || |||| |||
Sbjct 10794450 ACGTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTTTTACCAGTCAAAGTC 10794509
Query 133644 TTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 10794510 TTCACGAAGATCTGCAT 10794526
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/209 (71%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512
|| || | |||||| ||||| || |||||||| ||| | || ||| ||| || |
Sbjct 10793637 AAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAAAGAGT--ACGGCCGTCTTCAA 10793694
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
| || || || ||| | || | | || ||||| || ||||| ||||||||||| ||
Sbjct 10793695 GTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGA 10793754
Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
|||| ||| | | ||||| || || | || || || || | ||||| ||| ||||
Sbjct 10793755 TCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACCTCCAAGGTGATGGTCTTGC 10793814
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661
| ||||| ||||| |||||||| ||||||
Sbjct 10793815 CAGTCAGGGTTTTGACGAAAATTTGCATG 10793843
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/200 (71%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
||||| || ||||| |||||||||||| | || ||| ||| || || || || |
Sbjct 10792962 GTGGATTCCTTCTGGATATTGTAATCGGAAAGAGT--ACGGCCGTCTTCTAGTTGTTTTC 10793019
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || | | || ||||| || ||||| || || ||||| ||||| ||
Sbjct 10793020 CAGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTTAGCCT 10793079
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||||| || || | || || || || | ||||| ||||||||| |||||||
Sbjct 10793080 TGACGTTCTCAATTGTATCAGAAGGTTCGACTTCCAGGGTGATGGTTTTGCCAGTCAGAG 10793139
Query 133642 TTTTTACGAAAATCTGCATG 133661
|||| |||||||| ||||||
Sbjct 10793140 TTTTAACGAAAATTTGCATG 10793159
>seq5
Length=15459558
Score = 109 bits (120), Expect = 5e-19
Identities = 161/226 (71%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 120658 TGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCAT--GATGC 120715
|| ||||||||||| | ||| ||||| || ||| ||| || || || ||||| ||| |
Sbjct 2624754 TGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAAGATTC 2624695
Query 120716 CTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGA 120775
| | | || | |||| || | ||||||||||| || ||||| | || || |||
Sbjct 2624694 CGCT--TTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGACGG 2624637
Query 120776 TGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGG 120835
|||||| || || || || ||| | || ||||| ||||||||| |||||| || ||
Sbjct 2624636 CGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCCACAGCAAGG 2624577
Query 120836 CCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTT 120881
|||| |||||||| || || || |||| | ||||| ||| ||
Sbjct 2624576 CCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATT 2624531
>seq2
Length=15265516
Score = 100 bits (110), Expect = 3e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
|||||| || ||||| |||||||||||| | || | | | ||||||||||| || |
Sbjct 12970322 GGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCA-TCCTCGAGCTGTTTCC 12970264
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | ||||| || ||||| || || || || || || || || ||||| |
Sbjct 12970263 CGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCCTGAATCTTAGCTT 12970204
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||| | || || | ||||| || || | ||||| ||| ||||| ||||| |
Sbjct 12970203 TCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGG 12970144
Query 133642 TTTTTACGAAAATCTGCAT 133660
|||| ||||||||||||||
Sbjct 12970143 TTTTAACGAAAATCTGCAT 12970125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483408218973680
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