Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4 221 1e-52 seq7 111 2e-19 seq5 109 5e-19 seq2 100 3e-16 >seq4 Length=12290766 Score = 221 bits (244), Expect = 1e-52 Identities = 683/1043 (65%), Gaps = 34/1043 (3%) Strand=Plus/Minus Query 147959 ATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGACATGAG 148018 ||||||||| || ||||| | ||| | ||| ||||| |||| || ||||||| Sbjct 1759592 ATAGTACATCCCTGTCTTTAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACATGAC 1759533 Query 148019 CGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAATGAACGCGCC 148078 | || ||||| || | | | ||| | |||||| ||||||||||| |||||||| Sbjct 1759532 CCCATAATTCGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCC 1759473 Query 148079 ACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCCGTCTTGTACA 148137 | ||||| ||||| ||||| | | |||| | | ||||||||| | || || |||| Sbjct 1759472 TCTATCAGCCGCCATATCAAT-AATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACA 1759414 Query 148138 GCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAA 148197 | | || | || |||||||| || ||| || | ||| || | ||||| || Sbjct 1759413 GTTGTTTCAAATCGTCGGGAATCCCCGGAATGTTTTGAATCGAACCATAATTCGCAATAA 1759354 Query 148198 TCTGATTGCGCA---TTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATCAGAT 148254 ||||||| || | |||||| | || ||| ||| || | | ||| | Sbjct 1759353 TCTGATTCTTCATCGTATCGTCC---CAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGT 1759297 Query 148255 ACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAA 148314 ||||||||| || |||||||| || | | ||| |||| || ||| | || || Sbjct 1759296 GCTGATTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGT 1759237 Query 148315 ACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACG 148374 ||||||| ||| || || || |||||||| || || |||| ||||||||||| | Sbjct 1759236 ACGGTTCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAG 1759177 Query 148375 CTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGT 148434 | | || ||||| ||||| | |||| || ||||| |||| | | | ||| | Sbjct 1759176 CCAAAAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAAT 1759117 Query 148435 CCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGG 148494 |||| | | || || ||| ||||||||||||||||| | || | || | | Sbjct 1759116 CCCACAAATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCG 1759057 Query 148495 GGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGA 148554 | || || || | ||||| |||| | | ||||||||||| || ||||| | Sbjct 1759056 GTGACCCTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCA 1758997 Query 148555 GCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGC----GCCGCCGACTCG 148610 |||||||| |||| ||| ||| |||||||| ||| || || ||| ||| | Sbjct 1758996 AGGCGCCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAG-GGCTTTAGCCTCCG---GG 1758941 Query 148611 CTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCA 148670 || || | ||||| ||||| | | ||||| || || |||||||| || || | || Sbjct 1758940 CTATCAAAAGGCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCC 1758881 Query 148671 ATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGCGGATAGTGGTTGCGGTC 148729 | |||| ||| | || || ||||| |||| | | ||||||| || | || Sbjct 1758880 ACCGGCCTGTGGCGCAGATTCGACTTACGCGC-CTCTGGCAAAGGATAGTAATTCAGATC 1758822 Query 148730 GATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATC 148789 |||| |||| | ||| |||| || || || ||| || | | ||| || Sbjct 1758821 AATGACTTTGTTCAAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTC 1758762 Query 148790 GTA------CTTGTCATCT---ACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCA 148840 ||| | |||| || |||| ||| ||| |||||||| ||||| | || || Sbjct 1758761 GTAGCCGCTCCTGTCCGCTTTCACGA-ACAT--GTTTACGGCGATTGAGGCCAAGTTACA 1758705 Query 148841 CACGGCCGTCTCATCCGGGGCGCTGT--ACTCTACGATCTCGGCGCACAGATTGCTGCAT 148898 ||||| | || || ||| | ||| |||| || || || | ||| | |||||||| Sbjct 1758704 GACGGCGATTTCGTC--GGGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTC 1758647 Query 148899 TTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATG 148958 |||| ||| | || | ||| ||||| || ||||| || ||||| ||||| |||||| Sbjct 1758646 CTGATAGTGCCTAAATTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATG 1758587 Query 148959 TACGGTCCGCCAGTTTCCACCTG 148981 || || |||||| |||||||| Sbjct 1758586 TAAGGGGTGCCAGTCTCCACCTG 1758564 Score = 131 bits (144), Expect = 2e-25 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||| || ||||| || ||||||||| || ||| | | | ||||| || Sbjct 488960 AAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCA-TCCTCCAG 489018 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || ||||| |||| | ||||| || ||||| || |||||||||||||| ||| Sbjct 489019 CTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCTTCCTTGTC-CTGAA 489077 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | || | ||||| | ||||| || || | |||| ||| |||| Sbjct 489078 TTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGAGTGATGGTCTTGC 489137 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||||||| |||||||| ||||| Sbjct 489138 CGGTCAGAGTTTTCACGAAAATTTGCAT 489165 >seq7 Length=16482863 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || ||||| || ||||||||| || ||| ||| ||||| Sbjct 10794093 AAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCGAGT 10794152 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| |||| | ||||| || || ||||||||||| |||||||| |||| Sbjct 10794153 TGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATC 10794212 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | ||| | ||| || | |||||| || || | |||| ||| ||||| Sbjct 10794213 TTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATGGTCTTGCCA 10794272 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| || ||||| Sbjct 10794273 GTGAGTGTCTTAACGAAGATTTGCAT 10794298 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| || || ||| ||| ||||| || ||||| Sbjct 10794330 GTCGATTCCTTCTGGATGTTGTAGTCAGACAAAGTGCGTCCGTCTTCGAGTTGTTTGCCA 10794389 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | || |||||||| || ||||| ||||||||||| |||||| ||| Sbjct 10794390 GCGAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGGATCTTAGCTTTG 10794449 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | || |||| |||||| || || | ||||| |||||| || |||| ||| Sbjct 10794450 ACGTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTTTTACCAGTCAAAGTC 10794509 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 10794510 TTCACGAAGATCTGCAT 10794526 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | |||||| ||||| || |||||||| ||| | || ||| ||| || | Sbjct 10793637 AAGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCGGAAAGAGT--ACGGCCGTCTTCAA 10793694 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | || || || ||| | || | | || ||||| || ||||| ||||||||||| || Sbjct 10793695 GTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGA 10793754 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | ||||| || || | || || || || | ||||| ||| |||| Sbjct 10793755 TCTTGGCCTTAACATTCTCAATGGTATCAGAAGGTTCGACCTCCAAGGTGATGGTCTTGC 10793814 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | ||||| ||||| |||||||| |||||| Sbjct 10793815 CAGTCAGGGTTTTGACGAAAATTTGCATG 10793843 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 ||||| || ||||| |||||||||||| | || ||| ||| || || || || | Sbjct 10792962 GTGGATTCCTTCTGGATATTGTAATCGGAAAGAGT--ACGGCCGTCTTCTAGTTGTTTTC 10793019 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | | || ||||| || ||||| || || ||||| ||||| || Sbjct 10793020 CAGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTTAGCCT 10793079 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| || || | || || || || | ||||| ||||||||| ||||||| Sbjct 10793080 TGACGTTCTCAATTGTATCAGAAGGTTCGACTTCCAGGGTGATGGTTTTGCCAGTCAGAG 10793139 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| |||||||| |||||| Sbjct 10793140 TTTTAACGAAAATTTGCATG 10793159 >seq5 Length=15459558 Score = 109 bits (120), Expect = 5e-19 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 120658 TGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCAT--GATGC 120715 || ||||||||||| | ||| ||||| || ||| ||| || || || ||||| ||| | Sbjct 2624754 TGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACCTGGCATAAGATTC 2624695 Query 120716 CTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGA 120775 | | | || | |||| || | ||||||||||| || ||||| | || || ||| Sbjct 2624694 CGCT--TTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAATCCCTTCGACGG 2624637 Query 120776 TGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGG 120835 |||||| || || || || ||| | || ||||| ||||||||| |||||| || || Sbjct 2624636 CGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTATCCACAGCAAGG 2624577 Query 120836 CCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTT 120881 |||| |||||||| || || || |||| | ||||| ||| || Sbjct 2624576 CCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATT 2624531 >seq2 Length=15265516 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| |||||||||||| | || | | | ||||||||||| || | Sbjct 12970322 GGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCA-TCCTCGAGCTGTTTCC 12970264 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| || ||||| || || || || || || || || ||||| | Sbjct 12970263 CGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCCTGAATCTTAGCTT 12970204 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | || || | ||||| || || | ||||| ||| ||||| ||||| | Sbjct 12970203 TCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGG 12970144 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 12970143 TTTTAACGAAAATCTGCAT 12970125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483408218973680