Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7 129 4e-25 seq4 122 6e-23 >seq7 Length=16482863 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| |||||||| || || || |||||| || |||||||| |||||| Sbjct 10793388 CCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 10793447 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || ||||| ||||| ||||| |||||||| | ||||||||| | || Sbjct 10793448 AGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGA 10793507 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| ||||||| ||| || | || | ||||| | ||| || Sbjct 10793508 ATCCCCTCTTTGTCCTGAATTTTCGCCTTC-ACGTTTTCGATTGTGTCCGAAGGTTCGAC 10793566 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||||||||| || || || || || || || || ||||| Sbjct 10793567 TTCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| || ||||| || || ||| || || || ||||||||||| ||| Sbjct 10793844 CCACCTCTCAAACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGAG 10793903 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | |||||| |||||||| ||||| | || || ||| | || Sbjct 10793904 AGGGTACGCCCATCTTCTAGTTGTTTCCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793963 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||| || | | || | || | |||||| | ||| || Sbjct 10793964 ATCCCTTCCTTATCCTGAATCTT-AGCCTTGACGTTTTCAATCGTGTCGGAAGGTTCGAC 10794022 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || || || || || || ||||||||||| Sbjct 10794023 TTCCAAAGTAATGGTTTTCCCAGTCAAGGTCTTGACGAAGATCTGCAT 10794070 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| || ||||| || || ||| || || || |||||||||||||| Sbjct 10794072 CCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 10794131 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| |||| || | |||||| || || |||||||||||||| |||||| | || Sbjct 10794132 AAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 10794191 Query 33643 ACACCTTCTTTGTC 33656 | || || ||||| Sbjct 10794192 ATGCCCTCCTTGTC 10794205 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || ||||| | || ||||| || || || || || || |||||||| || || Sbjct 10794299 ACCGCCCCTCAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGA 10794358 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| |||| || | |||||| || || || |||||||| ||||| ||| | || Sbjct 10794359 CAAAGTGCGTCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 10794418 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || ||| | | | || | ||| ||| | || | Sbjct 10794419 GATACCTTCCTTGTCCTGGATCTTAGCTTTGA-CGTTTTCGATGGTATCGGAGGGCTCGA 10794477 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| |||||||| || || || || || ||||||||||| Sbjct 10794478 CCTCCAAGGTGATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| |||||||| || |||||| || || || || ||||||||||| Sbjct 10792932 CCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 10792991 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | ||||||||| ||||| ||||| | || || ||| | || Sbjct 10792992 AGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTGGG 10793051 Query 33643 ACACCTTCTTTGTC 33656 | ||| |||||||| Sbjct 10793052 ATACCCTCTTTGTC 10793065 >seq4 Length=12290766 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || ||| || || ||||| || ||| || || || |||||||||||||| Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || |||| ||||| || ||||||||||||||||| ||||| | || Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||||| | || |||| || | |||||| | || || Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTC-GCTTTGACATTTTCGATGGTGTCTGAAGGCTCGAC 489117 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| ||||| || || || || | ||||| || || || ||||| || Sbjct 489118 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCATCGT 489168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328695659341440