Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7 122 2e-22 seq4 100 7e-16 seq2 95.1 3e-14 >seq7 Length=16482863 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||||||||||||| | ||||| ||| ||| |||||| ||||| || ||| Sbjct 10793590 ACTGGAAAAACGATCACTCTTGAAGTCGAACCTTCGGACACAATCGAAAACGTGAAGGCG 10793531 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || ||||| || ||||| || ||| || || |||||| | || |||||||| || Sbjct 10793530 AAAATTCAGGACAAAGAGGGGATTCCCCCAGATCAGCAAAGATTGATTTTCGCCGGCAAA 10793471 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| ||||| | || | |||| |||||| ||||||||||||| || || ||| Sbjct 10793470 CAGTTGGAGGATGGTCGCACACTCTCCGACTACAACATCCAGAAAGAGTCGACCCTCCAC 10793411 Query 206374 CTTGTTTTGAGACTTCG 206390 | || ||| | || || Sbjct 10793410 TTGGTGTTGCGTCTCCG 10793394 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| ||||| ||||||| ||| |||||| ||| | || Sbjct 10793143 AAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTCTGATACAATTGAGAAC 10793084 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| ||||| || || || ||| |||||| | ||||| Sbjct 10793083 GTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAACAAAGATTGATCTTT 10793024 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| || | ||||| || | ||| | |||||||||| ||||||| || || Sbjct 10793023 GCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAATATCCAGAAGGAATCC 10792964 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||| | || ||| | || ||| Sbjct 10792963 ACTCTCCACTTGGTGTTGCGTCTCCGA 10792937 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || ||||| || ||||||||||| ||| ||| ||| Sbjct 10794067 CAGATCTTCGTCAAGACCTTGACTGGGAAAACCATTACTTTGGAAGTCGAACCTTCCGAC 10794008 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| |||||||| || || ||||| || || ||| ||| Sbjct 10794007 ACGATTGAAAACGTCAAGGCTAAGATTCAGGATAAGGAAGGGATCCCACCAGACCAACAA 10793948 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| ||||| || || | |||||||| | || | | ||||||||| || Sbjct 10793947 AGATTGATCTTTGCCGGGAAACAACTAGAAGATGGGCGTACCCTCTCAGATTACAACATC 10793888 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 ||||| || || || |||||| | || ||| Sbjct 10793887 CAGAAGGAATCCACCCTTCACTTGGTATTG 10793858 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || ||||| || || |||||||| || || ||||| | ||| Sbjct 10792687 AAGACGTTGACTGGGAAAACAATTACGTTGGAAGTTGAGCCATCGGACACGATTGAAAAT 10792628 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || ||||| ||| || ||| |||||| | ||||| Sbjct 10792627 GTGAAGGCCAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCAGCAAAGATTGATCTTT 10792568 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| |||||||||||||| | || | | || ||||| |||| || || || Sbjct 10792567 GCGGGAAAACAGTTGGAAGATGGTCGCACACTTTCGGACTACAATATCCAAAAGGAATCC 10792508 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || || | ||||| Sbjct 10792507 ACTCTTCATCTAGTCTTACGTCTTCG 10792482 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || ||||||||||||||||| ||| || ||||| ||||| || ||| Sbjct 10793362 ACTGGGAAGACGATCACTTTGGAAGTAGAACCATCGGACACTATCGAAAACGTTAAGGCG 10793303 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || ||||| || ||||| || ||| || || || || | ||||||||||| || Sbjct 10793302 AAAATTCAGGACAAAGAGGGGATTCCCCCAGATCAGCAGAGGTTGATCTTCGCCGGCAAA 10793243 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | |||||||| | ||| | |||| |||||| | || ||||| || || || ||| Sbjct 10793242 CAGCTCGAAGATGGCCGAACTCTCTCCGACTACAACATTCAAAAAGAATCAACACTCCAC 10793183 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || ||| | || ||| Sbjct 10793182 TTAGTATTGCGGCTCCGA 10793165 >seq4 Length=12290766 Score = 100 bits (110), Expect = 7e-16 Identities = 152/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || || ||| ||||| ||||| Sbjct 489150 AAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTTCAGACACCATCGAAAAT 489091 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300 || ||||| ||| ||||| || || ||||| ||| || || |||| || || || Sbjct 489090 GTCAAAGCGAAA-ATTCAGGACAAGGAAGGCATTCCCCCCGA---TCAACAGCGTTTGAT 489035 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 || || || || ||| |||| |||||| | |||||| ||||||||||| ||||||| || Sbjct 489034 TTTTGCGGGTAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAACATCCAGAAGGA 488975 Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||||| | |||||| | || ||| Sbjct 488974 ATCCACCCTTCATTTAGTTTTGCGTCTGCGA 488944 >seq2 Length=15265516 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || || || || || || |||| Sbjct 12970140 AAAACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCGTCAGATACTATCGAGAAT 12970199 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || ||||| || ||| ||||| ||| | || ||||| Sbjct 12970200 GTGAAAGCTAA-GATTCAGGATAAAGAGGGGATTCCCCCGGATCAGCAACGTCTCATCTT 12970258 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || ||| | || |||||| | || | |||||||||| ||||||| || || Sbjct 12970259 CGCCGGGAAACAGCTCGAGGATGGACGTACCCTCTCCGATTACAATATCCAGAAGGAATC 12970318 Query 206364 TACTCTTCACCTTGTTTTGAGACT 206387 || |||||||| ||||| ||||| Sbjct 12970319 CACCCTTCACCTAGTTTTAAGACT 12970342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181789274191522