Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4 172 5e-38 seq7 122 8e-23 seq2 107 2e-18 >seq4 Length=12290766 Score = 172 bits (190), Expect = 5e-38 Identities = 986/1547 (64%), Gaps = 61/1547 (4%) Strand=Plus/Minus Query 146889 CTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAA 146948 |||||| || ||||||||||| || | || ||| || || | ||| | ||| |||| | Sbjct 1759295 CTGATTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTA 1759236 Query 146949 AGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGC 147008 || || || |||||||| || || |||||||| || | || || ||||| || Sbjct 1759235 CGGTTCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGC 1759176 Query 147009 CACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTC 147068 || | | ||||| || | |||||| ||| || | |||||| ||| || Sbjct 1759175 CAAAAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATC 1759116 Query 147069 CCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGG 147128 ||||| | || || ||| ||||||||||||||| | || ||| ||||| | || Sbjct 1759115 CCACAAATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGG 1759056 Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAG 147188 || | | || || |||| | |||| ||| || || ||||| | Sbjct 1759055 TGACCCTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAA 1758996 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || || || || | |||||| ||||| ||||||| | | || || ||| || Sbjct 1758995 GGCGCCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATC 1758936 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 ||||||| ||||| || | || ||||| |||| ||||| | || | || | || Sbjct 1758935 AAAAGGCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGG 1758876 Query 147309 TCGATGCTTTTCGTTGCTGCG-CTT-CGCGC-TC-GCTATGGGATAGTGGTTGCGATCAA 147364 | || || | | || ||| ||||| || | | ||||||| || |||||| Sbjct 1758875 CCTGTGG----CGCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAA 1758820 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424 | | ||||| | || | |||||||| || ||| || | || | || || | Sbjct 1758819 TGACTTTGTTCAAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGT 1758760 Query 147425 AAG---TCCCGTCTTCGA-CACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAG 147480 | ||| ||| | |||| || || ||| |||||||| || |||| || ||| Sbjct 1758759 AGCCGCTCCTGTCCGCTTTCACGAAC--AT--GTTTACGGCGATTGAGGCCAAGTTACAG 1758704 Query 147481 ACGGCCGTCTCTTCGGCGTCGCTGTA--CTGCACGATTTCGGCGCACAGGTTGCTGCATT 147538 ||||| | || |||| || | |||| || || ||||| | ||| | ||||||| Sbjct 1758703 ACGGCGATTTCGTCGG-GT-GATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCC 1758646 Query 147539 TTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGT 147598 | || || |||||||| || |||||||||| || || ||||||||| ||||||||| Sbjct 1758645 TGATAGTGCCTAAATTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGT 1758586 Query 147599 ACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCA 147658 | || ||| ||||| || || | | ||| | | |||| ||||| | | Sbjct 1758585 AAGGGGTGCCAGTCTCCACCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTGGTA 1758526 Query 147659 CCCG-CTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCG 147717 | | || | |||||| || || | ||||| |||||||| || ||||| ||| Sbjct 1758525 ACTGTCTAAC-ATAGCGACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCG 1758467 Query 147718 CCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCC 147777 || | |||||||||||||| || |||| || ||||||||||| ||||| | ||||| Sbjct 1758466 CCCCAACAATCGGCAAGGCCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCG 1758407 Query 147778 GCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGC- 147836 || || || ||||| |||| || ||| ||||| ||| | | | ||||| || Sbjct 1758406 TTTTTCACCCGGCGCATGAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCC 1758347 Query 147837 -TTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATT-AAGCACGCTATAGATGTCGGCG 147894 || || | ||| ||| |||| ||||| || || | | | | || ||||| Sbjct 1758346 CTTAGC--TGCTCCTTCCCCGTGTTTTTCTTCAAGTTTAAAAAATCCAAA-ATATCGGCA 1758290 Query 147895 TGCCAGGGTTCAATGTAGACGGCC--AGCGCAC---CTTTACGCTTTCCGCCCTGGTCGA 147949 ||||| || || | ||| | || ||| | | |||| || || || ||||| | Sbjct 1758289 TGCCAAGGCTCGAGGTAAATAGCGCAAGCCCCCGGTCTTTTG--TTCCCCCCTTGGTCCA 1758232 Query 147950 CATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAG----TG 148005 | | |||| | ||||||||| ||||||| | ||| | | ||| || || || Sbjct 1758231 CGTAGCGCGCGGAGTTGTTAAAAACGCGCAAAACGGGCACAATCCCG-TCTGAGACTTTG 1758173 Query 148006 CCGTTGGTGG---AATTGATCT------TGCTGCCGCGGGCTCGCACTTCGTGCACGTTA 148056 | || || || || || || |||| ||| || | | ||| | | Sbjct 1758172 GGGGTGCCGGCCAAAGTGGTCCGAAAGGTGGTGCCTTTGGCCCGTAAGTTGTGAATACTG 1758113 Query 148057 ACGCCAATGCCGCC-GCCGTACTTTG---AT-ATGGCAGCGCAATCGCCCAATGT-CGTG 148110 ||||| | ||||| ||||| |||| || |||||| || | | ||| || | Sbjct 1758112 ACGCCTAGACCGCCTGCCGT--TTTGGAAATCATGGCA---CATTGGGTCAAACAGCGCG 1758058 Query 148111 TAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGA 148170 | ||||| |||| |||| | || | | ||| || || | | ||| || Sbjct 1758057 AA-ATGCCCTCGAGATTGTCCTCGGGGAGAGTTACGAGAAAGCAGGAGGAGAGTTGGGGT 1757999 Query 148171 ATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATC 148230 | | ||| | || ||||| || || ||||| ||||| || || |||||| ||| Sbjct 1757998 TTGGGTGTTGCAGCTGAGAAGAGTGTAGGACTGGCGTGTGTGAAGTATTTTTCTGACATG 1757939 Query 148231 ATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGC 148290 | || || || || || |||||||| |||||| ||||| | ||||||||| Sbjct 1757938 TAGTTGTAAGTTTCGATGGCTGAGTCGATGTCTGAGCCGTGGATGCCGACAGCGACGCGC 1757879 Query 148291 ATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTT 148350 || |||||||| || || || || | | || |||||| || || | || | Sbjct 1757878 ATTAGCATGTGTTGGGGGCGCTCAACGATTTTGCCGTTGATTTTAAGCAAGTAGGAACGC 1757819 Query 148351 TCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTA 148397 |||||||||||| |||| ||||| |||||| ||||| | ||||| Sbjct 1757818 TCGAGGGTTTTGAAACCGAAGTAATTGTAAGAGAAATCGCGATCGTA 1757772 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||||||| ||||| | | | || || || || |||||||| ||| || || Sbjct 488945 CGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTG 489004 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| || ||||||||||| | | | || | |||||||||||| || || |||||| Sbjct 489005 CGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCT 489064 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || |||||| ||| | | ||| | || || | ||||| || || | Sbjct 489065 TCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGA 489124 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || ||||||||||| | |||||| ||||| Sbjct 489125 GTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165 >seq7 Length=16482863 Score = 122 bits (134), Expect = 8e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| || ||||||| | |||| ||||||||||| || ||||| || ||| Sbjct 10792710 CGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTG 10792769 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 ||| ||||||||| ||||| || | | |||| | | ||| ||||||||||| |||||| Sbjct 10792770 CGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCT 10792829 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 |||||||| ||||| ||| | | || | || || | || || ||||| | Sbjct 10792830 TCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAA 10792889 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || |||| || || | |||||| |||||| Sbjct 10792890 GTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || || || | |||| ||||||||||||||||||||| | || || | Sbjct 10793172 CGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCA 10793231 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||||||||| |||| |||| | | ||| |||||||| || || || ||||| Sbjct 10793232 TCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCTTTG 10793291 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | ||| | ||| || | || || ||||| | || | | Sbjct 10793292 TCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACTTCCAAAGTGATC 10793351 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||||| ||| |||| ||| || |||||| Sbjct 10793352 GTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||||||||| || | | | || || || || |||||||| ||| || ||| || Sbjct 10794084 CGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCG 10794143 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| |||||||| | | || | |||||||||||||||||| ||||| || || Sbjct 10794144 TCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTTG 10794203 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | || | ||||| | ||||| ||||| | || | Sbjct 10794204 TCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATG 10794263 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || || || | ||| || ||||| Sbjct 10794264 GTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | |||||||| || |||||||||||| | || || | Sbjct 10793400 CGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCA 10793459 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | |||||| |||| | || | | || |||||||| || || || ||||| Sbjct 10793460 TCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTG 10793519 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| |||| | ||| | || || | || || ||||| | || | | Sbjct 10793520 TCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATC 10793579 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| ||||||| ||| || | |||||| |||||| Sbjct 10793580 GTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | ||||||||| || | | || || || || ||||||||||| || || || Sbjct 10794308 CAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGACAAAGTGCG 10794367 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||||| ||||| || | |||| | ||| || || ||||| || || ||||| Sbjct 10794368 TCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTC 10794427 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || ||| | | ||| | ||||||| ||||| || || | || Sbjct 10794428 CTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGT 10794487 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||||||||||| ||| || | ||| |||||||| Sbjct 10794488 GATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526 >seq2 Length=15265516 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| | || | | | || || || || || ||||| ||| | |||||| ||| Sbjct 12970336 AAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCATCC 12970277 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 ||||||||||| |||| |||| ||||| || ||||| || || || || |||||||| Sbjct 12970276 TCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCC 12970217 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||| || ||||| | || | |||||| | |||||| || || | || | || Sbjct 12970216 TGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGTC 12970157 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||| ||||| | |||||||||||| Sbjct 12970156 TTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476598796193520