Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq4 172 5e-38
seq7 122 8e-23
seq2 107 2e-18
>seq4
Length=12290766
Score = 172 bits (190), Expect = 5e-38
Identities = 986/1547 (64%), Gaps = 61/1547 (4%)
Strand=Plus/Minus
Query 146889 CTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAA 146948
|||||| || ||||||||||| || | || ||| || || | ||| | ||| |||| |
Sbjct 1759295 CTGATTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTA 1759236
Query 146949 AGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGC 147008
|| || || |||||||| || || |||||||| || | || || ||||| ||
Sbjct 1759235 CGGTTCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGC 1759176
Query 147009 CACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTC 147068
|| | | ||||| || | |||||| ||| || | |||||| ||| ||
Sbjct 1759175 CAAAAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATC 1759116
Query 147069 CCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGG 147128
||||| | || || ||| ||||||||||||||| | || ||| ||||| | ||
Sbjct 1759115 CCACAAATTTGTAGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGG 1759056
Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAG 147188
|| | | || || |||| | |||| ||| || || ||||| |
Sbjct 1759055 TGACCCTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAA 1758996
Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248
|| || || || | |||||| ||||| ||||||| | | || || ||| ||
Sbjct 1758995 GGCGCCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATC 1758936
Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308
||||||| ||||| || | || ||||| |||| ||||| | || | || | ||
Sbjct 1758935 AAAAGGCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGG 1758876
Query 147309 TCGATGCTTTTCGTTGCTGCG-CTT-CGCGC-TC-GCTATGGGATAGTGGTTGCGATCAA 147364
| || || | | || ||| ||||| || | | ||||||| || ||||||
Sbjct 1758875 CCTGTGG----CGCAGATTCGACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAA 1758820
Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424
| | ||||| | || | |||||||| || ||| || | || | || || |
Sbjct 1758819 TGACTTTGTTCAAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGT 1758760
Query 147425 AAG---TCCCGTCTTCGA-CACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAG 147480
| ||| ||| | |||| || || ||| |||||||| || |||| || |||
Sbjct 1758759 AGCCGCTCCTGTCCGCTTTCACGAAC--AT--GTTTACGGCGATTGAGGCCAAGTTACAG 1758704
Query 147481 ACGGCCGTCTCTTCGGCGTCGCTGTA--CTGCACGATTTCGGCGCACAGGTTGCTGCATT 147538
||||| | || |||| || | |||| || || ||||| | ||| | |||||||
Sbjct 1758703 ACGGCGATTTCGTCGG-GT-GATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCC 1758646
Query 147539 TTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGT 147598
| || || |||||||| || |||||||||| || || ||||||||| |||||||||
Sbjct 1758645 TGATAGTGCCTAAATTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGT 1758586
Query 147599 ACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCA 147658
| || ||| ||||| || || | | ||| | | |||| ||||| | |
Sbjct 1758585 AAGGGGTGCCAGTCTCCACCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTGGTA 1758526
Query 147659 CCCG-CTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCG 147717
| | || | |||||| || || | ||||| |||||||| || ||||| |||
Sbjct 1758525 ACTGTCTAAC-ATAGCGACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCG 1758467
Query 147718 CCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCC 147777
|| | |||||||||||||| || |||| || ||||||||||| ||||| | |||||
Sbjct 1758466 CCCCAACAATCGGCAAGGCCTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCG 1758407
Query 147778 GCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGC- 147836
|| || || ||||| |||| || ||| ||||| ||| | | | ||||| ||
Sbjct 1758406 TTTTTCACCCGGCGCATGAACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGCGTGCC 1758347
Query 147837 -TTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATT-AAGCACGCTATAGATGTCGGCG 147894
|| || | ||| ||| |||| ||||| || || | | | | || |||||
Sbjct 1758346 CTTAGC--TGCTCCTTCCCCGTGTTTTTCTTCAAGTTTAAAAAATCCAAA-ATATCGGCA 1758290
Query 147895 TGCCAGGGTTCAATGTAGACGGCC--AGCGCAC---CTTTACGCTTTCCGCCCTGGTCGA 147949
||||| || || | ||| | || ||| | | |||| || || || ||||| |
Sbjct 1758289 TGCCAAGGCTCGAGGTAAATAGCGCAAGCCCCCGGTCTTTTG--TTCCCCCCTTGGTCCA 1758232
Query 147950 CATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAG----TG 148005
| | |||| | ||||||||| ||||||| | ||| | | ||| || || ||
Sbjct 1758231 CGTAGCGCGCGGAGTTGTTAAAAACGCGCAAAACGGGCACAATCCCG-TCTGAGACTTTG 1758173
Query 148006 CCGTTGGTGG---AATTGATCT------TGCTGCCGCGGGCTCGCACTTCGTGCACGTTA 148056
| || || || || || || |||| ||| || | | ||| | |
Sbjct 1758172 GGGGTGCCGGCCAAAGTGGTCCGAAAGGTGGTGCCTTTGGCCCGTAAGTTGTGAATACTG 1758113
Query 148057 ACGCCAATGCCGCC-GCCGTACTTTG---AT-ATGGCAGCGCAATCGCCCAATGT-CGTG 148110
||||| | ||||| ||||| |||| || |||||| || | | ||| || |
Sbjct 1758112 ACGCCTAGACCGCCTGCCGT--TTTGGAAATCATGGCA---CATTGGGTCAAACAGCGCG 1758058
Query 148111 TAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGA 148170
| ||||| |||| |||| | || | | ||| || || | | ||| ||
Sbjct 1758057 AA-ATGCCCTCGAGATTGTCCTCGGGGAGAGTTACGAGAAAGCAGGAGGAGAGTTGGGGT 1757999
Query 148171 ATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATC 148230
| | ||| | || ||||| || || ||||| ||||| || || |||||| |||
Sbjct 1757998 TTGGGTGTTGCAGCTGAGAAGAGTGTAGGACTGGCGTGTGTGAAGTATTTTTCTGACATG 1757939
Query 148231 ATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGC 148290
| || || || || || |||||||| |||||| ||||| | |||||||||
Sbjct 1757938 TAGTTGTAAGTTTCGATGGCTGAGTCGATGTCTGAGCCGTGGATGCCGACAGCGACGCGC 1757879
Query 148291 ATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTT 148350
|| |||||||| || || || || | | || |||||| || || | || |
Sbjct 1757878 ATTAGCATGTGTTGGGGGCGCTCAACGATTTTGCCGTTGATTTTAAGCAAGTAGGAACGC 1757819
Query 148351 TCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTA 148397
|||||||||||| |||| ||||| |||||| ||||| | |||||
Sbjct 1757818 TCGAGGGTTTTGAAACCGAAGTAATTGTAAGAGAAATCGCGATCGTA 1757772
Score = 111 bits (122), Expect = 1e-19
Identities = 157/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| |||||||| ||||| | | | || || || || |||||||| ||| || ||
Sbjct 488945 CGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTG 489004
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| ||| || ||||||||||| | | | || | |||||||||||| || || ||||||
Sbjct 489005 CGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGAATGCCT 489064
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || |||||| ||| | | ||| | || || | ||||| || || |
Sbjct 489065 TCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGA 489124
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || || ||||||||||| | |||||| |||||
Sbjct 489125 GTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
>seq7
Length=16482863
Score = 122 bits (134), Expect = 8e-23
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| ||||| || ||||||| | |||| ||||||||||| || ||||| || |||
Sbjct 10792710 CGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGACAGGGTG 10792769
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
||| ||||||||| ||||| || | | |||| | | ||| ||||||||||| ||||||
Sbjct 10792770 CGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCT 10792829
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|||||||| ||||| ||| | | || | || || | || || ||||| |
Sbjct 10792830 TCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACTTCCAAA 10792889
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | ||| || || |||| || || | |||||| ||||||
Sbjct 10792890 GTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCATG 10792931
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| || || || | |||| ||||||||||||||||||||| | || || |
Sbjct 10793172 CGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGAGTTCGGCCA 10793231
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|||||||||||||| |||| |||| | | ||| |||||||| || || || |||||
Sbjct 10793232 TCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATCCCCTCTTTG 10793291
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| |||||| || | | ||| | ||| || | || || ||||| | || | |
Sbjct 10793292 TCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTACTTCCAAAGTGATC 10793351
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| || ||||||| ||| |||| ||| || ||||||
Sbjct 10793352 GTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCATG 10793387
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||||||||| || | | | || || || || |||||||| ||| || ||| ||
Sbjct 10794084 CGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCG 10794143
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|||||||| |||||||| | | || | |||||||||||||||||| ||||| || ||
Sbjct 10794144 TCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTTG 10794203
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || ||| | | || | ||||| | ||||| ||||| | || |
Sbjct 10794204 TCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAACTTCCAGAGTGATG 10794263
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || ||||| || || || | ||| || |||||
Sbjct 10794264 GTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCAT 10794298
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| || | | | |||||||| || |||||||||||| | || || |
Sbjct 10793400 CGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGACCA 10793459
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|| || | |||||| |||| | || | | || |||||||| || || || |||||
Sbjct 10793460 TCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGAATCCCCTCTTTG 10793519
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| |||||| |||| | ||| | || || | || || ||||| | || | |
Sbjct 10793520 TCCTGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGACTTCAAGAGTGATC 10793579
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
||||| ||||||| ||| || | |||||| ||||||
Sbjct 10793580 GTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCATG 10793615
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||| | ||||||||| || | | || || || || ||||||||||| || || ||
Sbjct 10794308 CAATCTCAAAACCAAGTGGAGCGTCGATTCCTTCTGGATGTTGTAGTCAGACAAAGTGCG 10794367
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
|||||||| ||||| || | |||| | ||| || || ||||| || || |||||
Sbjct 10794368 TCCGTCTTCGAGTTGTTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTC 10794427
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|| || || || ||| | | ||| | ||||||| ||||| || || | ||
Sbjct 10794428 CTTGTCCTGGATCTTAGCTTTGACGTTTTCGATGGTATCGGAGGGCTCGACCTCCAAGGT 10794487
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| ||||||||||||| ||| || | ||| ||||||||
Sbjct 10794488 GATGGTTTTACCAGTCAAAGTCTTCACGAAGATCTGCAT 10794526
>seq2
Length=15265516
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971
||||| | || | | | || || || || || ||||| ||| | |||||| |||
Sbjct 12970336 AAAACTAGGTGAAGGGTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCATCC 12970277
Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031
||||||||||| |||| |||| ||||| || ||||| || || || || ||||||||
Sbjct 12970276 TCGAGCTGTTTCCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCC 12970217
Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091
||| || ||||| | || | |||||| | |||||| || || | || | ||
Sbjct 12970216 TGAATCTTAGCTTTCACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGTC 12970157
Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| |||||||| ||||| | ||||||||||||
Sbjct 12970156 TTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 12970125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476598796193520
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