Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2 125 6e-24 seq7 122 8e-23 seq4 100 3e-16 >seq2 Length=15265516 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| | || || || | ||||| | || ||||| ||| | Sbjct 12970125 ATGCAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTCGA-GCCGTC 12970183 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||||||| | || ||| || ||| ||||||||||| || || || ||||| Sbjct 12970184 AGATACTATCGAGAATGTGAAAGCTAAGATTCAGGATAAAGAGGGGATTCCCCCGGATCA 12970243 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | ||||| | || ||| ||||| ||||| |||| | | || ||||||||| Sbjct 12970244 GCAACGTCTCATCTTCGCCGGGAAACAGCTCGAGGATGGACGTACCCTCTCCGATTACAA 12970303 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || || ||||||||| |||| |||| |||||| | ||||| || Sbjct 12970304 TATCCAGAAGGAATCCACCCTTCACCTAGTTTTAAGACTCAGAGGTGG 12970351 >seq7 Length=16482863 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || ||||| || || || || || ||||||| | ||||| ||| ||| Sbjct 10793387 CATGCAAATCTTCGTAAAGACTTTGACTGGGAAGACGATCACTTTGGAAGTAGAA-CCAT 10793329 Query 25234 CG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 || | |||||||| | || || |||||| || |||||||| || || || |||| Sbjct 10793328 CGGACACTATCGAAAACGTTAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATC 10793269 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| || | || | || ||||||||| |||||||||| ||| | || ||| |||| Sbjct 10793268 AGCAGAGGTTGATCTTCGCCGGCAAACAGCTCGAAGATGGCCGAACTCTCTCCGACTACA 10793209 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 | |||||||||||||| || | || ||||| || Sbjct 10793208 ACATTCAAAAAGAATCAACACTCCACTTAGTATT 10793175 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || || || || ||||| ||||||| | ||||| ||| || Sbjct 10792931 CATGCAAATTTTCGTGAAGACCTTGACGGGAAAGACGATCACTTTGGAAGTAGAACCCTC 10792872 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || ||| | || ||| ||||| |||||||| || || || || ||||| Sbjct 10792871 AGACACAATTGAGAATGTTAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCA 10792812 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 ||| || | || | | ||||||||||||||||||| | | |||| || || Sbjct 10792811 GCAGAGGTTGATCTTTGCTGGCAAACAACTCGAAGATGGGCGCACCCTGTC--GGACTAT 10792754 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||||||||| ||| | |||||||| || | || ||||||| Sbjct 10792753 AATATTCAAAAAGAATCAACCCTACATTTAGTATTGCGTCTGCGAGGAGG 10792704 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || || || || |||||| ||||||| | ||||||||| | Sbjct 10793615 CATGCAAATTTTCGTGAAGACTTTGACTGGAAAAACGATCACTCTTGAAGTCGAACCTTC 10793556 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || || |||||| || |||||||| || || || ||||| Sbjct 10793555 GGACACAATCGAAAACGTGAAGGCGAAAATTCAGGACAAAGAGGGGATTCCCCCAGATCA 10793496 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||| | |||| || ||||||||| | || |||| | | | || ||| ||||| Sbjct 10793495 GCAAAGATTGATTTTCGCCGGCAAACAGTTGGAGGATGGTCGCACACTCTCCGACTACAA 10793436 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || || ||||| || ||| | || || ||||| Sbjct 10793435 CATCCAGAAAGAGTCGACCCTCCACTTGGTGTT 10793403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||| | || || ||| | ||||| | ||||||||| | Sbjct 10793159 CATGCAAATTTTCGTTAAAACTCTGACTGGCAAAACCATCACCCTGGAAGTCGAACCTTC 10793100 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || || || ||| || ||||||||||| || || || || Sbjct 10793099 TGATACAATTGAGAACGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACCA 10793040 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | || | | || |||||||| ||||| | | | | | ||||||||| Sbjct 10793039 ACAAAGATTGATCTTTGCTGGAAAACAACTAGAAGACGGCCGTACTCTTTCCGATTACAA 10792980 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||| || || |||||||| | || || ||||| Sbjct 10792979 TATCCAGAAGGAATCCACTCTCCACTTGGTGTT 10792947 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || ||| | || || || | ||||| | ||||| || || Sbjct 10794298 ATGCAAATCTTCGTTAAGACACTCACTGGCAAGACCATCACTCTGGAAGTTGAGCCCTCT 10794239 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || ||| || || || || ||||| || || || ||||| Sbjct 10794238 GATACGATCGAGAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCAA 10794179 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || | | |||| || || |||||||||||||| | | | |||| |||||||| Sbjct 10794178 CAGCGTTTGATTTTCGCTGGTAAACAACTCGAAGACGGACGCACCTTGTC--CGATTACA 10794121 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || || || ||||||||| |||| || || || | |||| ||||| Sbjct 10794120 ACATCCAGAAGGAATCCACCCTTCACTTGGTTTTGCGTCTGAGGGGAGG 10794072 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||| | || || || | ||||| | || |||||| | Sbjct 10793843 CATGCAAATTTTCGTCAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAACCTTC 10793784 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || || || || || || || ||||| || || || || Sbjct 10793783 TGATACCATTGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCA 10793724 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | || | || || |||||||| ||||| | | | | | ||| ||||| Sbjct 10793723 ACAAAGATTGATCTTCGCTGGAAAACAACTTGAAGACGGCCGTACTCTTTCCGACTACAA 10793664 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||| ||||||||||||||| | || || ||||| Sbjct 10793663 TATCCAAAAAGAATCCACCCTCCACTTGGTGTT 10793631 >seq4 Length=12290766 Score = 100 bits (110), Expect = 3e-16 Identities = 489/772 (63%), Gaps = 11/772 (1%) Strand=Plus/Minus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 ||| |||||||| || | ||| ||||| ||||| || || | ||||||||| || ||||| Sbjct 1759634 CACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCTGTCTT 1759575 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757 ||||||||| ||||| || ||| || || |||| | ||| |||| | || Sbjct 1759574 TAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACATGACCCCATAATTCGGGGCCGC 1759515 Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817 | || ||| | ||| || ||||| || || | | || | || || ||||| | Sbjct 1759514 AATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGCCGCCAT-AT 1759456 Query 136818 CAATAGT-ACTTTTTGCTTAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCG 136876 ||||| | ||||| ||| ||| ||||| | |||||| | || | || | || | | Sbjct 1759455 CAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAAATCGTCGG 1759396 Query 136877 GAATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGAT---TTTCATCATGAGAT 136933 |||| | || || || | || || | || || || ||| |||| || Sbjct 1759395 GAATCCCCGGAATGTTTTGAATCGAACCATAATTCGCAATAATCTGATTCTTCATCGTAT 1759336 Query 136934 CAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGAT 136993 | ||| | | ||||| | | | | | || |||||||| || |||||| Sbjct 1759335 C-GTC--CCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACGACTTGAA 1759279 Query 136994 ATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGT 137053 | || || || | ||| | | || || | |||| |||| |||| ||| |||||| | Sbjct 1759278 ACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTCGATTCAT 1759219 Query 137054 TGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCC 137113 | ||||||||||| || ||||||| || || ||||| ||| | | | ||||| | Sbjct 1759218 TATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGCGAATTGC 1759159 Query 137114 GTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCGATT 137173 | | ||||| | ||| | || || || | || ||| | ||||| ||| | | Sbjct 1759158 GAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTTGTAG--- 1759102 Query 137174 GGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAAG 137233 | || | ||||| || ||||||| | || |||| | || || |||||| Sbjct 1759101 GAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCATAAG 1759042 Query 137234 AATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGTAAA 137293 ||||| | |||| | || |||||||| ||| | | ||||| || |||| Sbjct 1759041 TCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAATAAA 1758982 Query 137294 TAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATCCA 137353 |||||| | |||| | || | || |||| || |||| || | ||||| || Sbjct 1758981 GCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGGCATTCGCA 1758922 Query 137354 ATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTG 137405 | | ||| ||||| || || || |||| || || || | || ||||| Sbjct 1758921 GGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTG 1758870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445082816418240