Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1425 224 1e-53 >seq1425 Length=145493 Score = 224 bits (248), Expect = 1e-53 Identities = 425/621 (68%), Gaps = 11/621 (2%) Strand=Plus/Plus Query 147013 GTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTC 147072 || || |||| || ||||| || ||||| || |||||||||||||| ||||||| |||| Sbjct 66464 GTAAGAAGCGCATAACTGGCGATATTGAACGGCACCCCCAGGCCCATATCCCCCGCCCTC 66523 Query 147073 TGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCAC 147132 ||||||||| || ||||| || ||||||||| ||||||| ||| ||| || Sbjct 66524 TGGTACAGCAAACAGCTCAGCTCGCCCTCGGCCACGAAAAACTGCGCCAGACAGTGACAT 66583 Query 147133 GGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG 147192 |||||||||||||| | ||| || || ||||| ||||| | | | || || | Sbjct 66584 GGCGGCAGCGCCATTTTGTGCAAATCTTTCGGATTCCACGCCGACATGATAATCCTCC-G 66642 Query 147193 CTC-TCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCC 147251 || | || ||| || ||||| | || |||| | |||||||||||| |||| | Sbjct 66643 ATCGTTCGGATTCGTCCTAATCGTGTGTATGACCCGCGCCAGCTGGTCCACCCCCTCGTT 66702 Query 147252 CCCGTAGTTTGTCCCGCAGTCCAC---GTACCTGGCCCCAAAGTGCCTCCACTGGAAGCC 147308 | ||||| ||| | || | |||| ||||||||||||| ||||||||| || Sbjct 66703 CGTGTAGT---CCCCCTGGACCCCCTTGTACTCCGCCCCAAAGTGCCGCCACTGGAACCC 66759 Query 147309 GTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTC 147368 ||| | ||||||||||| || || | | |||||| | | |||||| | Sbjct 66760 GTAGATGGGCCCCAGGTCCCCCTCCTCGTACTCCTCCAAGCCCACTGAGTCCAGAAACGC 66819 Query 147369 GGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGT 147428 | | | || ||||||||| ||| ||| || | ||| || || || | ||| Sbjct 66820 GCGACTGCTGTTGGCGTCCCAAATGTGCACGTTTTTCTCCTTGAGGTCGTTCGAATTCGT 66879 Query 147429 GGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGT 147488 ||||| ||||||||||||||||||||| | || | | ||| || |||| |||||| Sbjct 66880 CGAGCCTTTGATGAACCAGAGCAGCTCCTCGACGACAGCGCGCCAGAAAACCCGCTTGGT 66939 Query 147489 GGTCAGCAGGGGGAAC---TGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAACACAGA 147545 ||||||||| || ||| | |||| || || || | | |||| |||| || | || Sbjct 66940 GGTCAGCAGCGGAAACACGTTATCCCGGAGGGAGTAGCGCATCTGGACCCCGAAAATCGA 66999 Query 147546 CAGCGTGCCCGTGCCCGTCCTGTCCTCCCTGCGCGTCCCGTTCTCCAAAATCTCCCTGAC 147605 ||| || || ||| ||||||||| ||| | ||| || |||| |||| | || Sbjct 67000 CAGAGTCCCGATGCGGGTCCTGTCCATCCTCTGGACCCCCTTTTCCAGGATCTGGCGGAT 67059 Query 147606 GGTGTTGAGGTACTGGTGCTC 147626 | | ||||||||||| ||| Sbjct 67060 GTGGGAGAGGTACTGGTACTC 67080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583472814724800