Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq5 149 9e-30
seq59 87.8 3e-11
>seq5
Length=15459558
Score = 149 bits (164), Expect = 9e-30
Identities = 380/566 (67%), Gaps = 12/566 (2%)
Strand=Plus/Plus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
||||| || |||| || |||||| ||| ||||| | || ||||||| ||||
Sbjct 2624153 GAGCCCCTTCTGCAGGAAAACCCGCGCCGGTTTGTGGTCTTTCCCATCCAGTACCCCGAC 2624212
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835
|| ||||| | ||| | ||| | || ||||| |||||||| |||| || || || |
Sbjct 2624213 ATTTGGGACAAATACAAGCAAG-CGGAAGCCTCGTTTTGGACGACCGAAGAAGTAGATTT 2624271
Query 1455836 CGGCGCC-GACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCATCA 1455891
| || || || | ||||| | |||| || || ||| | |||||
Sbjct 2624272 -GTCGAAAGATTTGGACGACTGGAAGAACAAACTGAATTCTGATGAACGCTACTTCATTT 2624330
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
|||||| || || ||||| ||| ||| || || ||||| ||| ||||| | ||
Sbjct 2624331 CGCACGTTCTTGCATTTTT-CGCAGCCTCTGACGGAATCGTCAACGAAAACCTCGTCGAG 2624389
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
| || | | ||||| ||| || | || || || | |||||||||||||| |||||
Sbjct 2624390 AGGTTCAGCCAGGAGGTGCAAGTGACCGAAGCTCGCTGCTTTTACGGGTTCCAAATCGCT 2624449
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
|| ||||||||||| || || | ||| | ||||||| || ||| | || ||
Sbjct 2624450 ATTGAAAACATCCATTCGGAGATGTACAGCATGTTGATCGAAACGTACATTTCTGAGCCC 2624509
Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131
|||||||| | | || || ||||| ||| |||| | || | ||| ||||||
Sbjct 2624510 CAGGAGAAGGAGTTCTTGTTCAATGCGATCGAGACGCTGCCCTGTGTTAAGAAGAAGGCC 2624569
Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191
|||||||| || |||||| ||| || | | | |||| |||| ||| || |||| |
Sbjct 2624570 GACTGGGCCTTGCTGTGGATAAAC-AGCAAGAACGCGAC-TTTTGGCGAACGAATCGTGG 2624627
Query 1456192 GCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTC 1456249
||||||| |||||| || || || ||||| ||||| || ||| | || || |||||
Sbjct 2624628 CGTTTGCCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCTT-TGCTTCGATTTTCTGGCTT 2624686
Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|| ||||| || ||||| |||||
Sbjct 2624687 AAAAAGCGGAATCTTATGCCAGGTCT 2624712
>seq59
Length=9125
Score = 87.8 bits (96), Expect = 3e-11
Identities = 197/294 (67%), Gaps = 4/294 (1%)
Strand=Plus/Plus
Query 332926 GTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGC 332985
||| || |||| || ||||| |||||||| | | ||||||| || | |||||
Sbjct 4826 GTTACAAGCCAAAGCGAACCGAGTCGTATTACTGTAAATTTCCATCGTGCGTCTTAGGGC 4885
Query 332986 CTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCC 333045
||||| ||| | || | | ||| ||||||| | ||| ||||| |||||||| ||
Sbjct 4886 TTGTTGCGCCCCTTCGGTCATACTGTCCACCTCGTCCAAGATAATGATTTTGTGGCGTCC 4945
Query 333046 GTGCGGCAGATCAACCCTTTTCGAGGCGTGGTG--TTTGATGATCTTGCGCACGACGTCC 333103
|||| ||| || |||| | ||| |||||| | || || || |||||
Sbjct 4946 AGGCGGGAGAGTGAC--TTTTTGTTGCGCAAACATTTTGATTTTGTTACGGACAACGTCT 5003
Query 333104 ACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAG 333163
| || | |||| ||||||||||||||||| || || || | || | || ||
Sbjct 5004 ATACCTCTGTCGTTTGACGCGTTGAGTTCGAGAACAGCGTCTTTAAACGCTGGGCCTAAA 5063
Query 333164 AGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217
|||| || ||||||||| ||| | ||||| |||||| ||| || || |||
Sbjct 5064 AGGATTCGGGCCAGGCACAGGATTGTGGTGGTTTTGCCCACGCCAGGAGGCCCC 5117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177610387273284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |