Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5 149 9e-30 seq59 87.8 3e-11 >seq5 Length=15459558 Score = 149 bits (164), Expect = 9e-30 Identities = 380/566 (67%), Gaps = 12/566 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| || |||| || |||||| ||| ||||| | || ||||||| |||| Sbjct 2624153 GAGCCCCTTCTGCAGGAAAACCCGCGCCGGTTTGTGGTCTTTCCCATCCAGTACCCCGAC 2624212 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| | ||| | ||| | || ||||| |||||||| |||| || || || | Sbjct 2624213 ATTTGGGACAAATACAAGCAAG-CGGAAGCCTCGTTTTGGACGACCGAAGAAGTAGATTT 2624271 Query 1455836 CGGCGCC-GACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCATCA 1455891 | || || || | ||||| | |||| || || ||| | ||||| Sbjct 2624272 -GTCGAAAGATTTGGACGACTGGAAGAACAAACTGAATTCTGATGAACGCTACTTCATTT 2624330 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||| || || ||||| ||| ||| || || ||||| ||| ||||| | || Sbjct 2624331 CGCACGTTCTTGCATTTTT-CGCAGCCTCTGACGGAATCGTCAACGAAAACCTCGTCGAG 2624389 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 | || | | ||||| ||| || | || || || | |||||||||||||| ||||| Sbjct 2624390 AGGTTCAGCCAGGAGGTGCAAGTGACCGAAGCTCGCTGCTTTTACGGGTTCCAAATCGCT 2624449 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || ||||||||||| || || | ||| | ||||||| || ||| | || || Sbjct 2624450 ATTGAAAACATCCATTCGGAGATGTACAGCATGTTGATCGAAACGTACATTTCTGAGCCC 2624509 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 |||||||| | | || || ||||| ||| |||| | || | ||| |||||| Sbjct 2624510 CAGGAGAAGGAGTTCTTGTTCAATGCGATCGAGACGCTGCCCTGTGTTAAGAAGAAGGCC 2624569 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 |||||||| || |||||| ||| || | | | |||| |||| ||| || |||| | Sbjct 2624570 GACTGGGCCTTGCTGTGGATAAAC-AGCAAGAACGCGAC-TTTTGGCGAACGAATCGTGG 2624627 Query 1456192 GCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTC 1456249 ||||||| |||||| || || || ||||| ||||| || ||| | || || ||||| Sbjct 2624628 CGTTTGCCGCCGTCGAAGGGATTTTCTTCTCTGGCAGCTT-TGCTTCGATTTTCTGGCTT 2624686 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || ||||| || ||||| ||||| Sbjct 2624687 AAAAAGCGGAATCTTATGCCAGGTCT 2624712 >seq59 Length=9125 Score = 87.8 bits (96), Expect = 3e-11 Identities = 197/294 (67%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 332926 GTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGC 332985 ||| || |||| || ||||| |||||||| | | ||||||| || | ||||| Sbjct 4826 GTTACAAGCCAAAGCGAACCGAGTCGTATTACTGTAAATTTCCATCGTGCGTCTTAGGGC 4885 Query 332986 CTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCC 333045 ||||| ||| | || | | ||| ||||||| | ||| ||||| |||||||| || Sbjct 4886 TTGTTGCGCCCCTTCGGTCATACTGTCCACCTCGTCCAAGATAATGATTTTGTGGCGTCC 4945 Query 333046 GTGCGGCAGATCAACCCTTTTCGAGGCGTGGTG--TTTGATGATCTTGCGCACGACGTCC 333103 |||| ||| || |||| | ||| |||||| | || || || ||||| Sbjct 4946 AGGCGGGAGAGTGAC--TTTTTGTTGCGCAAACATTTTGATTTTGTTACGGACAACGTCT 5003 Query 333104 ACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAG 333163 | || | |||| ||||||||||||||||| || || || | || | || || Sbjct 5004 ATACCTCTGTCGTTTGACGCGTTGAGTTCGAGAACAGCGTCTTTAAACGCTGGGCCTAAA 5063 Query 333164 AGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 |||| || ||||||||| ||| | ||||| |||||| ||| || || ||| Sbjct 5064 AGGATTCGGGCCAGGCACAGGATTGTGGTGGTTTTGCCCACGCCAGGAGGCCCC 5117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177610387273284