Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4 116 3e-21 seq7 93.3 4e-14 >seq4 Length=12290766 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||| || ||||| | || ||||| || ||||||||||||| | Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||||||| ||||||||||| ||||| ||||| || || | ||| Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || ||||||||| ||| ||| || || | | || | | ||||| | || || Sbjct 489059 ATGCCTTCCTTGTCC-TGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGAC 489117 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || || |||| ||||||||| || || ||||| Sbjct 489118 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165 >seq7 Length=16482863 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | || ||| || || || | || || |||||||||||||| |||| Sbjct 10793160 CCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAG 10793219 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || || ||||| || || || || ||||||| |||||| || | ||| Sbjct 10793220 AGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGGGA 10793279 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| |||||| ||| ||| | ||| | || | | ||||| | ||| || Sbjct 10793280 ATCCCCTCTTTGTCC-TGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTAC 10793338 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||||| || || |||||||| || || || || ||||| Sbjct 10793339 TTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||||||||| || | || ||| || || |||||||| |||| Sbjct 10793388 CCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 10793447 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| ||| || || || || ||||| | ||||| || | ||| Sbjct 10793448 AGTGTGCGACCATCCTCCAACTGTTTGCCGGCGAAAATCAATCTTTGCTGATCTGGGGGA 10793507 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| |||||| ||| ||| || |||| || | | ||||| | ||| || Sbjct 10793508 ATCCCCTCTTTGTCC-TGAATTTTCGCCTTCACGTTTTCGATTGTGTCCGAAGGTTCGAC 10793566 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||||||||| || |||||||| ||||| || || ||||| Sbjct 10793567 TTCAAGAGTGATCGTTTTTCCAGTCAAAGTCTTCACGAAAATTTGCAT 10793614 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||||| |||||| || |||| || || || ||||| || || Sbjct 10794108 TCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAA 10794167 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||||| ||||| || || | ||| | || |||||||||| |||||| Sbjct 10794168 ATCAAACGCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATCTT 10794214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450781868096560