Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq4 302 6e-77
seq5 279 7e-70
>seq4
Length=12290766
Score = 302 bits (334), Expect = 6e-77
Identities = 937/1439 (65%), Gaps = 31/1439 (2%)
Strand=Plus/Minus
Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424
||||||| ||| || |||||||| | || ||||| || | || ||||||||| ||
Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580
Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGA----ATAACT 68480
|| || | ||| | ||| |||||||||||||| | || || |||| |
Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCAT----GGAAGACATGACCCCATAATT 1759524
Query 68481 TGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGC 68540
|| | || ||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct 1759523 CGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGC 1759464
Query 68541 CGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGAT 68600
|||||| | |||||| || || | ||| ||||| | || ||| | | ||||| |
Sbjct 1759463 CGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAA 1759404
Query 68601 ATCATCTGGAAGGCTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTT 68657
||| || |||| | || | |||||||| || ||| || | ||||| ||||||
Sbjct 1759403 ATCGTCGGGAATCCCCGGAATGTTTTGAATCGAACCATAATTCGCAATAATCTGATTCTT 1759344
Query 68658 GATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTAT 68717
||| ||| | ||| | ||||| || ||| | | || || ||| |||| || |
Sbjct 1759343 CATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACGAC 1759284
Query 68718 TTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 68777
|||||| |||||||| ||||| | | || |||||| || || ||||| ||
Sbjct 1759283 TTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTCGA 1759224
Query 68778 TTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACT 68837
||||||||| |||| |||||| ||||| || || || ||||| || |||| | ||
Sbjct 1759223 TTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGCGA 1759164
Query 68838 ATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGA 68897
||| | || ||| | | | |||||| | ||| | || ||||||||| | || |
Sbjct 1759163 ATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTTGT 1759104
Query 68898 TGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATA 68957
|| || ||| | ||||| || | | || | ||| | ||| || | |||
Sbjct 1759103 AGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCATA 1759044
Query 68958 TGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATA 69017
|| ||||| || || | || ||| || ||||| ||||| ||||| || || ||||||||
Sbjct 1759043 AGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAATA 1758984
Query 69018 AATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATG 69077
|| ||||||||||| | | || || ||| || || | ||||| || || |
Sbjct 1758983 AAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGGCATTCG 1758924
Query 69078 TAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTT 69137
| ||||| || ||||| |||| |||||||||||||| || | || || || | |
Sbjct 1758923 CAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGCGCAG 1758864
Query 69138 ATTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGAT 69196
||| | |||| | || ||||| | |||||| ||||| | ||| || | ||| || | ||
Sbjct 1758863 ATTCG-ACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCAAAT 1758805
Query 69197 TTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATC-------GTCCA 69249
| | || ||||| | ||||| | ||| ||| || | | ||||
Sbjct 1758804 TCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCCTGTCC- 1758746
Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309
|| | || ||||| || | || | || || | ||||| || || | || | |
Sbjct 1758745 GCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCGGGT 1758686
Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369
|| | | | | ||| || || |||| ||| || | ||||||| || | ||||||
Sbjct 1758685 GATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTTTGT 1758626
Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429
|| || || || ||||||| ||||| ||||| || || | || || ||||| || | |
Sbjct 1758625 TGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCCACC 1758566
Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCT--TGTAACGCT 69487
|| || || ||||| ||||||| ||| || | | || |||| || ||
Sbjct 1758565 TGGGAGACGCAAATAGCGCGCCAAACGTCCC--GCGCTGGTAACTGTCTAACATAGCGAC 1758508
Query 69488 TCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547
|| | || |||| | || | |||||| || || |||||| ||| | | |
Sbjct 1758507 CGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGGCAAGGC 1758448
Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607
| || | | | ||||||||||| ||||| || || | || || || ||| |
Sbjct 1758447 CTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGCGCATGA 1758388
Query 69608 ATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCT--TCATTTCC 69665
| | || || |||| | ||| | || | || | || | || || || || ||
Sbjct 1758387 ACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGC--GTGCCCTTAGCTGCTCCTTCCC 1758330
Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725
|| ||||| || | | | ||| |||| |||||| | |||||| || || || || ||
Sbjct 1758329 CGTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAAT 1758270
Query 69726 CGC-CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783
|| || | | ||||||| ||| || || || || || | ||| | || | ||| |||
Sbjct 1758269 AGCGCAAG-CCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTA 1758212
>seq5
Length=15459558
Score = 279 bits (308), Expect = 7e-70
Identities = 597/888 (67%), Gaps = 8/888 (1%)
Strand=Plus/Minus
Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376
||||| | || |||||||| || || ||||| || ||||| || ||||||||
Sbjct 2625069 ACTCCGCTCTTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTG 2625010
Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436
|| ||| | ||||||||| |||||||| || || || |||| | | || ||
Sbjct 2625009 GAAATAATCGTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAAC 2624950
Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496
|| | |||||| || || |||||||| |||||| ||||| | || ||||||
Sbjct 2624949 TCGCCCAACAATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATT 2624890
Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT 39556
|| || | | ||||||| ||| || || | || || || ||||| | || || |||
Sbjct 2624889 CCAATCATGCTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCT 2624830
Query 39557 GTTATTATCGATGTTACTACCT-CATCACTCGGTGGATGCAATAAATGTTTAAACATTAA 39615
|| || | | | | | | | | | ||| |||| || || ||||| ||
Sbjct 2624829 TGGATAAT-GCTTTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAA 2624771
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
||||| || || |||||||||||||| || || ||| | ||| || |||||||||||
Sbjct 2624770 ACAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAG 2624711
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735
|| ||||| ||| |||||||| ||||| || || | |||||| ||||| |||||
Sbjct 2624710 ACCTGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAA 2624651
Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTATG 39792
|| ||||| || || ||||| || || | || || || || | | | | | |
Sbjct 2624650 AATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTT 2624591
Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852
||||||| | ||||| || || |||||||| ||||| |||| || || || |||||
Sbjct 2624590 TATCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATT 2624531
Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912
|| | | | || || | || || || || || || |||| || |||||
Sbjct 2624530 GAACAAGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACAT 2624471
Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972
|| ||||||||||||||||| || || || || |||||||| || | ||||| || |
Sbjct 2624470 CTCCGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCAC 2624411
Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032
||| ||||| | || || || | | ||||| || || ||||| ||| || ||
Sbjct 2624410 TTGCACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGC 2624351
Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCA 40089
|||||||| | || || ||| || || |||||| | ||| | || |||||
Sbjct 2624350 GAAAAATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCA 2624291
Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149
||| | | |||||| || | |||||||||||| | ||||||||||| || || || |
Sbjct 2624290 GTCGTCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTG 2624231
Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197
||||| ||| ||| || || | || || || ||||| | |||||
Sbjct 2624230 CTTGTATTTGTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAA 2624183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686890923198480
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