Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 302 6e-77 seq5 279 7e-70 >seq4 Length=12290766 Score = 302 bits (334), Expect = 6e-77 Identities = 937/1439 (65%), Gaps = 31/1439 (2%) Strand=Plus/Minus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||||| ||| || |||||||| | || ||||| || | || ||||||||| || Sbjct 1759639 TTATCCACTGTGAATTGAATGGGATTAGCGGCCGGTTTCGTCCTTAAATAGTACATCCCT 1759580 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGA----ATAACT 68480 || || | ||| | ||| |||||||||||||| | || || |||| | Sbjct 1759579 GTCTTTAAACCCTTATCCCACCCGTAGAAATGCAT----GGAAGACATGACCCCATAATT 1759524 Query 68481 TGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGC 68540 || | || ||||||||||||||||| ||||| || || || || || |||||||| || Sbjct 1759523 CGGGGCCGCAATATGAATATTCATCGACTGACTCTGGTCAATAAACGCGCCTCTATCAGC 1759464 Query 68541 CGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGAT 68600 |||||| | |||||| || || | ||| ||||| | || ||| | | ||||| | Sbjct 1759463 CGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTATACAGTTGTTTCAA 1759404 Query 68601 ATCATCTGGAAGGCTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTT 68657 ||| || |||| | || | |||||||| || ||| || | ||||| |||||| Sbjct 1759403 ATCGTCGGGAATCCCCGGAATGTTTTGAATCGAACCATAATTCGCAATAATCTGATTCTT 1759344 Query 68658 GATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTAT 68717 ||| ||| | ||| | ||||| || ||| | | || || ||| |||| || | Sbjct 1759343 CATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCAGGTGCTGATTCACGAC 1759284 Query 68718 TTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 68777 |||||| |||||||| ||||| | | || |||||| || || ||||| || Sbjct 1759283 TTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAGTGTACGGTTCGGTCGA 1759224 Query 68778 TTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACT 68837 ||||||||| |||| |||||| ||||| || || || ||||| || |||| | || Sbjct 1759223 TTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTGGAGCCAAAAGTAGCGA 1759164 Query 68838 ATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGA 68897 ||| | || ||| | | | |||||| | ||| | || ||||||||| | || | Sbjct 1759163 ATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACCAATCCCACAAATTTGT 1759104 Query 68898 TGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATA 68957 || || ||| | ||||| || | | || | ||| | ||| || | ||| Sbjct 1759103 AGGAGTGACGCCCCACATGTCGTACTGCAAGACACCTTGACTGACCGGTGACCCTTCATA 1759044 Query 68958 TGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATA 69017 || ||||| || || | || ||| || ||||| ||||| ||||| || || |||||||| Sbjct 1759043 AGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAACTAGCCTCCAAGGCGCCGTAATA 1758984 Query 69018 AATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATG 69077 || ||||||||||| | | || || ||| || || | ||||| || || | Sbjct 1758983 AAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCTCCGGGCTATCAAAAGGCATTCG 1758924 Query 69078 TAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTT 69137 | ||||| || ||||| |||| |||||||||||||| || | || || || | | Sbjct 1758923 CAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCAATTCCCACCGGCCTGTGGCGCAG 1758864 Query 69138 ATTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGAT 69196 ||| | |||| | || ||||| | |||||| ||||| | ||| || | ||| || | || Sbjct 1758863 ATTCG-ACTTACGCGCCTCTGGCAAAGGATAGTAATTCAGATCAATGACTTTGTTCAAAT 1758805 Query 69197 TTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATC-------GTCCA 69249 | | || ||||| | ||||| | ||| ||| || | | |||| Sbjct 1758804 TCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGTTAAAGTCGTAGCCGCTCCTGTCC- 1758746 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 || | || ||||| || | || | || || | ||||| || || | || | | Sbjct 1758745 GCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGTTACAGACGGCGATTTCGTCGGGT 1758686 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 || | | | | ||| || || |||| ||| || | ||||||| || | |||||| Sbjct 1758685 GATGTAAACTCGACTATTTCCGTGCATAAATTGCTGCTCCTGATAGTGCCTAAATTTTGT 1758626 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || || || || ||||||| ||||| ||||| || || | || || ||||| || | | Sbjct 1758625 TGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCATGTAAGGGGTGCCAGTCTCCACC 1758566 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCT--TGTAACGCT 69487 || || || ||||| ||||||| ||| || | | || |||| || || Sbjct 1758565 TGGGAGACGCAAATAGCGCGCCAAACGTCCC--GCGCTGGTAACTGTCTAACATAGCGAC 1758508 Query 69488 TCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547 || | || |||| | || | |||||| || || |||||| ||| | | | Sbjct 1758507 CGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACTCTTCGCCCCAACAATCGGCAAGGC 1758448 Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607 | || | | | ||||||||||| ||||| || || | || || || ||| | Sbjct 1758447 CTGGTGACTGGTGTGGACACATCAGGGACCATTTCTCGTCGTTTTTCACCCGGCGCATGA 1758388 Query 69608 ATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCT--TCATTTCC 69665 | | || || |||| | ||| | || | || | || | || || || || || Sbjct 1758387 ACAAGTCAGGCGTCCACAAAGCGAAGAACAAGTCGC--GTGCCCTTAGCTGCTCCTTCCC 1758330 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725 || ||||| || | | | ||| |||| |||||| | |||||| || || || || || Sbjct 1758329 CGTGTTTTTCTTCAAGTTTAAAAAATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAAT 1758270 Query 69726 CGC-CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783 || || | | ||||||| ||| || || || || || | ||| | || | ||| ||| Sbjct 1758269 AGCGCAAG-CCCCCGGTCTTTTGTTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTA 1758212 >seq5 Length=15459558 Score = 279 bits (308), Expect = 7e-70 Identities = 597/888 (67%), Gaps = 8/888 (1%) Strand=Plus/Minus Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 ||||| | || |||||||| || || ||||| || ||||| || |||||||| Sbjct 2625069 ACTCCGCTCTTCTGGTATTCCCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCGTTG 2625010 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436 || ||| | ||||||||| |||||||| || || || |||| | | || || Sbjct 2625009 GAAATAATCGTCATGAAATCGAACGGATTCTGTGAGTTGTAGATTTTCTCGCACCCCAAC 2624950 Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496 || | |||||| || || |||||||| |||||| ||||| | || |||||| Sbjct 2624949 TCGCCCAACAATCTGTCGGCCACAAATTCGATGTATTGGCACATCAAAGCGCAGTTCATT 2624890 Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT 39556 || || | | ||||||| ||| || || | || || || ||||| | || || ||| Sbjct 2624889 CCAATCATGCTGACTGGTAAAGCTTCAGTCAAGAATTCCTTCTCGATTTTGACCGCGTCT 2624830 Query 39557 GTTATTATCGATGTTACTACCT-CATCACTCGGTGGATGCAATAAATGTTTAAACATTAA 39615 || || | | | | | | | | | ||| |||| || || ||||| || Sbjct 2624829 TGGATAAT-GCTTTGAATCCGTTCTTTGGACGGCTTCTGCACCAAGTGAGAGAACATCAA 2624771 Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||||| || || |||||||||||||| || || ||| | ||| || ||||||||||| Sbjct 2624770 ACAGGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAG 2624711 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| ||| |||||||| ||||| || || | |||||| ||||| ||||| Sbjct 2624710 ACCTGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAA 2624651 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTATG 39792 || ||||| || || ||||| || || | || || || || | | | | | | Sbjct 2624650 AATCCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTT 2624591 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||||| | ||||| || || |||||||| ||||| |||| || || || ||||| Sbjct 2624590 TATCCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATT 2624531 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 || | | | || || | || || || || || || |||| || ||||| Sbjct 2624530 GAACAAGAACTCCTTCTCCTGGGGCTCAGAAATGTACGTTTCGATCAACATGCTGTACAT 2624471 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || ||||||||||||||||| || || || || |||||||| || | ||||| || | Sbjct 2624470 CTCCGAATGGATGTTTTCAATAGCGATTTGGAACCCGTAAAAGCAGCGAGCTTCGGTCAC 2624411 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 ||| ||||| | || || || | | ||||| || || ||||| ||| || || Sbjct 2624410 TTGCACCTCCTGGCTGAACCTCTCGACGAGGTTTTCGTTGACGATTCCGTCAGAGGCTGC 2624351 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCA 40089 |||||||| | || || ||| || || |||||| | ||| | || ||||| Sbjct 2624350 GAAAAATGCAAGAACGTGCGAAATGAAGTAGCGTTCATCAGAATTCAGTTTGTTCTTCCA 2624291 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 ||| | | |||||| || | |||||||||||| | ||||||||||| || || || | Sbjct 2624290 GTCGTCCAAATCTTTCGACAAATCTACTTCTTCGGTCGTCCAAAACGAGGCTTCCGCTTG 2624231 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||||| ||| ||| || || | || || || ||||| | ||||| Sbjct 2624230 CTTGTATTTGTCCCAAATGTCGGGGTACTGGATGGGAAAGACCACAAA 2624183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686890923198480