Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq5 185 7e-42
seq4 123 2e-23
>seq5
Length=15459558
Score = 185 bits (204), Expect = 7e-42
Identities = 590/901 (65%), Gaps = 23/901 (3%)
Strand=Plus/Plus
Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744
||||| ||| ||||||| || ||||| || || || | ||||| ||| | | |||
Sbjct 2624168 GAAAACCCGCGCCGGTTTGTGGTCTTTCCCATCCAGTACCCCGACATTTGGGACAAATAC 2624227
Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804
|| |||| | || || |||||||| | |||||||| |||||| | ||||| || |
Sbjct 2624228 AAGCAAGCGGAAGCCTCGTTTTGGACGACCGAAGAAGTAGATTTGTCGAAAGATTTGGAC 2624287
Query 43805 CATTGGATTGCATTAAAACCACAA----GAAAAAC---ATTTTATATCTTTGGTTTTGGC 43857
| |||| | | || | || || ||| | || || || ||| | ||
Sbjct 2624288 GACTGGA----AGAACAAACTGAATTCTGATGAACGCTACTTCATTTCGCACGTTCTTGC 2624343
Query 43858 GTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGA 43917
||||| || || ||||| || ||||| ||||| | || |||| || ||
Sbjct 2624344 ATTTTTCGCAGCCTCTGACGGAATCGTCAACGAAAACCTCGTCGAGAGGTTCAGCCAGGA 2624403
Query 43918 AGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCA 43977
|| ||| | | ||||| || || ||||| ||||| ||||| || || ||||| || ||
Sbjct 2624404 GGTGCAAGTGACCGAAGCTCGCTGCTTTTACGGGTTCCAAATCGCTATTGAAAACATCCA 2624463
Query 43978 TTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCG 44037
|||||| |||||||| | |||| || |||||||| || || |||||| |
Sbjct 2624464 TTCGGAGATGTACAGCATGTTGATCGAAACGTACATTTCTGAGCCCCAGGAGAAGGAGTT 2624523
Query 44038 ATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTA 44096
||||| |||||||| || || | || || | |||| | || || ||||||||| |
Sbjct 2624524 CTTGTTCAATGCGATCGAGACGCTGCCCTGTG-TTAAGAAGAAGGCCGACTGGGCCTTGC 2624582
Query 44097 AATGGATAAATT-CAA--ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153
|||||||| ||| | | ||||||| |||||| | || |||||||| | || |
Sbjct 2624583 TGTGGATAAACAGCAAGAACGCGACTTTTGGCGAACGAATCGTGGCGTTTGCCGCCGTCG 2624642
Query 44154 AAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213
|||| |||||||| || || ||||| | || || ||| | || || || | | |
Sbjct 2624643 AAGGGATTTTCTTCTCTGGCAGCTTTGCTTCGATTTTCTGGCTTAAAAAGCGGAATCTTA 2624702
Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273
|||| || | || ||||| ||||| | || | || || ||| ||||||||||||
Sbjct 2624703 TGCCAGGTCTCACATTTTCCAATGAACTGATTTCGAGGGACGAGGGCCTACATTGCGATT 2624762
Query 44274 TTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCC-TTCATGTAAGACAATTACA 44332
|||| || ||| | || | || || | | ||||| | || || | | | |
Sbjct 2624763 TTGCCTGTTTGAT-GTTCTCTCACTTGGTG--CAGAAGCCGTCCAAAGAACGGATTCAAA 2624819
Query 44333 GATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTA 44392
| ||| | ||| || || || || || | ||||| |||| ||| ||||| ||
Sbjct 2624820 G-CATTATCCAAGACGCGGTCAAAATCGAGAAGGAATTCTTGACTGAAGCTTTACCAGTC 2624878
Query 44393 AATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCG 44451
| | || |||||||| || | ||||||| |||||| || |||| | || || |
Sbjct 2624879 AGCATGATTGGAATGAACTGCGC-TTTGATGTGCCAATACATCGAATTTGTGGCCGACAG 2624937
Query 44452 TTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTAT 44511
|| | || |||| ||||| ||| ||| | ||| || ||||| ||||| ||
Sbjct 2624938 ATTGTTGGGCGAGTTGGGGTGCGAGAAAATCTACAACTCACAGAATCCGTTCGATTTCAT 2624997
Query 44512 GGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571
| | |||||| |||||||| || || || ||||| || || || ||||| ||
Sbjct 2624998 GACGATTATTTCCAACGAAGGCAAGACGAATTTCTTTGAGAAGAAAGTGGGGGAATACCA 2625057
Query 44572 G 44572
|
Sbjct 2625058 G 2625058
>seq4
Length=12290766
Score = 123 bits (136), Expect = 2e-23
Identities = 238/350 (68%), Gaps = 12/350 (3%)
Strand=Plus/Plus
Query 40860 GATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT 40919
|| || || ||||| || || |||||||| || |||| ||| || ||||| || | ||
Sbjct 288280 GAGGAGGGCGATCTGGGACCGGTTTATGGTTTCCAGTGGCGCCACTTTGGGGCCGAGTAC 288339
Query 40920 GACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGAT 40979
| ||| ||| ||||| ||||| |||| || || ||||| ||||| ||
Sbjct 288340 AAGGGGATGCACTGGGATTACGCCAATCAAGGGATTGACCAATTGGCTCATGTTATCGAA 288399
Query 40980 ACGATT------AAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCA 41033
|| ||| ||| || | |||||| || || ||| |||| |||||||| |||
Sbjct 288400 ACAATTCGTAATAAACCCAA---CGATAGGAGA---ATCATAATGTGTGCGTGGAATCCA 288453
Query 41034 ACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093
||| | | ||||| | || |||||||| | | ||||||| ||
Sbjct 288454 GTGGATATTCCCGAAATGGCCCTCCCGCCTTGTCACTGCCTCGTGCAGTTTTTTGTGGCA 288513
Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153
||||| ||| |||| ||| ||||| ||||| || | ||| ||||| || ||||| |||
Sbjct 288514 AATGGGGAATTGTCGTGTTTGTTGTACCAAAGGTCGGCTGATATGGGGCTGGGGGTGCCG 288573
Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203
|| || || || |||||| | || | ||||||||||||||||| |||||
Sbjct 288574 TTCAATATTGCAAGTTATTCCTTGTTGACGTATATGATTGCACATGTTAC 288623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397445914802410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |