Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5 185 7e-42 seq4 123 2e-23 >seq5 Length=15459558 Score = 185 bits (204), Expect = 7e-42 Identities = 590/901 (65%), Gaps = 23/901 (3%) Strand=Plus/Plus Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 ||||| ||| ||||||| || ||||| || || || | ||||| ||| | | ||| Sbjct 2624168 GAAAACCCGCGCCGGTTTGTGGTCTTTCCCATCCAGTACCCCGACATTTGGGACAAATAC 2624227 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804 || |||| | || || |||||||| | |||||||| |||||| | ||||| || | Sbjct 2624228 AAGCAAGCGGAAGCCTCGTTTTGGACGACCGAAGAAGTAGATTTGTCGAAAGATTTGGAC 2624287 Query 43805 CATTGGATTGCATTAAAACCACAA----GAAAAAC---ATTTTATATCTTTGGTTTTGGC 43857 | |||| | | || | || || ||| | || || || ||| | || Sbjct 2624288 GACTGGA----AGAACAAACTGAATTCTGATGAACGCTACTTCATTTCGCACGTTCTTGC 2624343 Query 43858 GTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGA 43917 ||||| || || ||||| || ||||| ||||| | || |||| || || Sbjct 2624344 ATTTTTCGCAGCCTCTGACGGAATCGTCAACGAAAACCTCGTCGAGAGGTTCAGCCAGGA 2624403 Query 43918 AGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCA 43977 || ||| | | ||||| || || ||||| ||||| ||||| || || ||||| || || Sbjct 2624404 GGTGCAAGTGACCGAAGCTCGCTGCTTTTACGGGTTCCAAATCGCTATTGAAAACATCCA 2624463 Query 43978 TTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCG 44037 |||||| |||||||| | |||| || |||||||| || || |||||| | Sbjct 2624464 TTCGGAGATGTACAGCATGTTGATCGAAACGTACATTTCTGAGCCCCAGGAGAAGGAGTT 2624523 Query 44038 ATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTA 44096 ||||| |||||||| || || | || || | |||| | || || ||||||||| | Sbjct 2624524 CTTGTTCAATGCGATCGAGACGCTGCCCTGTG-TTAAGAAGAAGGCCGACTGGGCCTTGC 2624582 Query 44097 AATGGATAAATT-CAA--ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153 |||||||| ||| | | ||||||| |||||| | || |||||||| | || | Sbjct 2624583 TGTGGATAAACAGCAAGAACGCGACTTTTGGCGAACGAATCGTGGCGTTTGCCGCCGTCG 2624642 Query 44154 AAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 |||| |||||||| || || ||||| | || || ||| | || || || | | | Sbjct 2624643 AAGGGATTTTCTTCTCTGGCAGCTTTGCTTCGATTTTCTGGCTTAAAAAGCGGAATCTTA 2624702 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 |||| || | || ||||| ||||| | || | || || ||| |||||||||||| Sbjct 2624703 TGCCAGGTCTCACATTTTCCAATGAACTGATTTCGAGGGACGAGGGCCTACATTGCGATT 2624762 Query 44274 TTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCC-TTCATGTAAGACAATTACA 44332 |||| || ||| | || | || || | | ||||| | || || | | | | Sbjct 2624763 TTGCCTGTTTGAT-GTTCTCTCACTTGGTG--CAGAAGCCGTCCAAAGAACGGATTCAAA 2624819 Query 44333 GATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTA 44392 | ||| | ||| || || || || || | ||||| |||| ||| ||||| || Sbjct 2624820 G-CATTATCCAAGACGCGGTCAAAATCGAGAAGGAATTCTTGACTGAAGCTTTACCAGTC 2624878 Query 44393 AATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCG 44451 | | || |||||||| || | ||||||| |||||| || |||| | || || | Sbjct 2624879 AGCATGATTGGAATGAACTGCGC-TTTGATGTGCCAATACATCGAATTTGTGGCCGACAG 2624937 Query 44452 TTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTAT 44511 || | || |||| ||||| ||| ||| | ||| || ||||| ||||| || Sbjct 2624938 ATTGTTGGGCGAGTTGGGGTGCGAGAAAATCTACAACTCACAGAATCCGTTCGATTTCAT 2624997 Query 44512 GGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 | | |||||| |||||||| || || || ||||| || || || ||||| || Sbjct 2624998 GACGATTATTTCCAACGAAGGCAAGACGAATTTCTTTGAGAAGAAAGTGGGGGAATACCA 2625057 Query 44572 G 44572 | Sbjct 2625058 G 2625058 >seq4 Length=12290766 Score = 123 bits (136), Expect = 2e-23 Identities = 238/350 (68%), Gaps = 12/350 (3%) Strand=Plus/Plus Query 40860 GATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT 40919 || || || ||||| || || |||||||| || |||| ||| || ||||| || | || Sbjct 288280 GAGGAGGGCGATCTGGGACCGGTTTATGGTTTCCAGTGGCGCCACTTTGGGGCCGAGTAC 288339 Query 40920 GACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGAT 40979 | ||| ||| ||||| ||||| |||| || || ||||| ||||| || Sbjct 288340 AAGGGGATGCACTGGGATTACGCCAATCAAGGGATTGACCAATTGGCTCATGTTATCGAA 288399 Query 40980 ACGATT------AAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCA 41033 || ||| ||| || | |||||| || || ||| |||| |||||||| ||| Sbjct 288400 ACAATTCGTAATAAACCCAA---CGATAGGAGA---ATCATAATGTGTGCGTGGAATCCA 288453 Query 41034 ACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093 ||| | | ||||| | || |||||||| | | ||||||| || Sbjct 288454 GTGGATATTCCCGAAATGGCCCTCCCGCCTTGTCACTGCCTCGTGCAGTTTTTTGTGGCA 288513 Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 ||||| ||| |||| ||| ||||| ||||| || | ||| ||||| || ||||| ||| Sbjct 288514 AATGGGGAATTGTCGTGTTTGTTGTACCAAAGGTCGGCTGATATGGGGCTGGGGGTGCCG 288573 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 || || || || |||||| | || | ||||||||||||||||| ||||| Sbjct 288574 TTCAATATTGCAAGTTATTCCTTGTTGACGTATATGATTGCACATGTTAC 288623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397445914802410