Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq4 141 8e-29
seq7 136 3e-27
seq2 98.7 8e-16
>seq4
Length=12290766
Score = 141 bits (156), Expect = 8e-29
Identities = 974/1544 (63%), Gaps = 58/1544 (4%)
Strand=Plus/Minus
Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794
||| || | || || | ||| | || |||||| || |||| || || || || || ||
Sbjct 1759310 ATCCTTCAGCAGGTGCTGATTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATA 1759251
Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854
|| || ||| ||||||| ||||| || || || || ||||| || || | ||
Sbjct 1759250 GATATTAGAAGTGTACGGTTCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGC 1759191
Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914
|||||||| |||| | ||| ||||| |||| ||||| | | ||||||| ||
Sbjct 1759190 CGTGGGCATTGGAGCCAAAAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTT 1759131
Query 130915 CAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAG 130974
||| || ||||||||| | | ||||| |||| | |||||| || | || |
Sbjct 1759130 CAAATCGGACCAATCCCACAAATTTGTAGGAGTGAC---GCCCCACATGTCGTACTGCAA 1759074
Query 130975 TATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTT-CGACACGAGCCA 131033
| |||| |||| | || ||| | | || || || | | || ||||
Sbjct 1759073 GACACCTTGACTGACCGGTGACCCTTCATAAGTCTCATACGGGCCGTACTTTTCG-GCCA 1759015
Query 131034 GGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATT 131093
| ||| ||||| ||||| || |||||||||| |||||| |||||| ||||
Sbjct 1759014 GTTCGCAACTAGCCTCCAAGGCGCCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGG 1758955
Query 131094 GTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCT 131153
||| || | ||| || |||| | | || | ||| || || || || || ||||
Sbjct 1758954 CTTTAGCCTCCGGGCTATCAAAAGGCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCT 1758895
Query 131154 GTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGGTG--GG 131211
| | ||||| |||||||| || || | ||| | ||||||| | | || ||
Sbjct 1758894 GAACCCCAATTCCCACCGGCCTGTGGCGCAGATTCGACTTACGCG--CCTCTGGCAAAGG 1758837
Query 131212 ATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTT 131271
||| || | ||||| | |||||| ||||| | |||| || |||| ||
Sbjct 1758836 ATAGTAATTCAGATCAATGACTTTGTTCAAATTCTTTGCCACAACTTTGGTGATTTCCTT 1758777
Query 131272 CAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGA 131331
||| |||| || || | || | || || || || ||||| |||||
Sbjct 1758776 CAACTTGTTAAAGTCGTAGCCGCTCCTGTCCGCTTTCACGAACATGTTTACGGCGATTGA 1758717
Query 131332 CGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGCAATACTGAACAATTTCGGCGCAC 131389
|||| ||||| || || ||||||| | || | || ||| || ||||| | |||
Sbjct 1758716 GGCCAAGTTACAGACGGCGATTTCGTCGGGTGAT-GTAA-ACTCGACTATTTCCGTGCAT 1758659
Query 131390 AAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTC 131448
||||| |||||| | || ||||| ||||||||||| |||||||| | | ||||| |||
Sbjct 1758658 AAATTGCTGCTCCTGATAGTGCCTAAATTTTGTTGGTTGCTTTT-CCTGTTACATGCGTC 1758600
Query 131449 CTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAAAGAG 131508
||||| | |||||| || ||||| || || || || | | ||| || | |
Sbjct 1758599 TTTGTAGAGCATGTAAGGGGTGCCAGTCTCCACCTGGGAGACGCAAATAGCGCGCCAAAC 1758540
Query 131509 TTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGT 131568
| || || | || || || | ||| | ||||| ||||||||||| |
Sbjct 1758539 GTCCCGCGCTGGTAACTGTCTAACATAGCGACCGTCAGTCTCGTATTTTTCGTACAATTT 1758480
Query 131569 TTCAAAGT-TTTGGCCAAACGAACTGTCCAA---ATTGGGACATTCGCTGGGACACATTA 131624
||| || | || | || ||| | | | ||| | | ||| | | |||||||| |
Sbjct 1758479 TTCGAACTCTTCGCCCCAACAATCGG--CAAGGCCTGGTGAC--TGGTGTGGACACATCA 1758424
Query 131625 GCGACCA---CACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACG 131681
| ||||| | || |||| || || || ||| ||||| || ||| ||| || |
Sbjct 1758423 GGGACCATTTCTCGTCGTT---TTTCACCCGGCGCATGAACAAGTCAGGCGTCCACAAAG 1758367
Query 131682 CGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAA 131741
|| | |||| || | || || || || | ||| | |||| ||||| |||||||
Sbjct 1758366 CGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCTTCCCCGTGTTTTTCTTCAAGTTTAAAA 1758307
Query 131742 AGTCCAAAATGTCCGCATGCCAGGGTTC----CAAATA-CAC-TGCCATTGCGCCTTTGC 131795
| |||||||| || |||||||| || || ||||| | | ||| | | ||||
Sbjct 1758306 AATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAATAGCGCAAGCCCCCGGTCTTTTG- 1758248
Query 131796 GCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCA 131855
|| || ||||| | || | || | |||||| | |||||||| | |||| | |
Sbjct 1758247 --TTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTAAAAACGCGCAAAACGGGCACAA 1758190
Query 131856 AACCG---------TTGGCGTTTC---CATTGGTGCTCTTAATGTAGCTGCCATTGGCTC 131903
||| |||| | | | | ||| || || | | |||| ||||| |
Sbjct 1758189 TCCCGTCTGAGACTTTGGGGGTGCCGGCCAAAGTGGTCCGAAAGGTGGTGCCTTTGGCCC 1758130
Query 131904 TGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTG 131962
| ||||||| ||| || | ||| || ||||| ||| || || | || |||| |
Sbjct 1758129 GTAAGTTGTGAATACTGACGCCTAGACCGCCTGCCGT-TTTGGAAATCATGGCACATTGG 1758071
Query 131963 GTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAG 132022
|| | | | | || || || | ||||| ||| | || | |||||| |||
Sbjct 1758070 GTCAAACAGCGCGAAATGCCCTCGAGATTGTCCTCGGGGAGAGTTACGAGAAAGCAGGAG 1758011
Query 132023 GACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGT 132082
|| | || | | ||| | ||||| || | ||| || ||||||||||| || |
Sbjct 1758010 GAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTGTAGGACTGGCGTGTGTGAAGTAT 1757951
Query 132083 TTTTTGGCCATGCACCGATACGATTGTATAGCGGACTCGATATC-GCCCAGATGTATGGT 132141
|||| | |||| | || | || || || || ||||| || | | | || |||
Sbjct 1757950 TTTTCTGACATGTAGTTGTAAGTTTCGATGGCTGAGTCGATGTCTGAGCCG-TGGATGCC 1757892
Query 132142 CAATGCGACCCGCATGTACATGTGTTGAATGCGCTCGGCCGTTTTGCCGTCGATTTTGAT 132201
| ||||| ||||| ||||||||| |||||| | ||||||||| |||||| |
Sbjct 1757891 GACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCAACGATTTTGCCGTTGATTTTAAG 1757832
Query 132202 CAAATA--ACCGTTTTCCAAAGTTTTGAAACCAAAATATTTGTA 132243
||| || | || || | ||||||||||| || || |||||
Sbjct 1757831 CAAGTAGGAACG--CTCGAGGGTTTTGAAACCGAAGTAATTGTA 1757790
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || |||| ||||| || ||||| | || || || || || || ||||| ||| |
Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| |||| | || || ||||||||||| || |||| | |||||||||||| || ||
Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || || || || || || ||| | |||| | ||||||| | || ||
Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACC 489118
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| || | ||||| |||||||||||||| || ||||||||
Sbjct 489119 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165
>seq7
Length=16482863
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
||||||| | || ||||| ||||| || | || || || || || || ||||| |||
Sbjct 10794070 TGCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGG 10794129
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
|| | |||| |||||||||| |||||||| ||| |||| | |||||||||||| || |
Sbjct 10794130 ACAAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAG 10794189
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||||| || || ||||||| ||| | | | || | || || | || ||||
Sbjct 10794190 GGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAA 10794249
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|||| ||||| || | ||||| || || || || || ||||||||||||
Sbjct 10794250 CTTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCATA 10794299
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| |||| |||||||| ||||||| || || |||||||||||||| ||||| |
Sbjct 10792704 CCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGAC 10792763
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | ||||| | |||||||| ||||| || || | || | | ||| ||||| || ||
Sbjct 10792764 AGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 10792823
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || |||||||| ||| || ||| | | || | ||||||| || ||| |||
Sbjct 10792824 ATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACT 10792883
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | ||| || | || ||||||| || ||||| || ||||||||
Sbjct 10792884 TCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| || || | ||||||||| || || | || || ||||||||||| |||||||||
Sbjct 10793158 TGCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 10793217
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| | || | |||||||||||||| |||||| | || | | ||| ||||| || |
Sbjct 10793218 AGAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGG 10793277
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | |||||||| || || || || | | |||| | |||||| | | ||| |
Sbjct 10793278 GAATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTA 10793337
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|||| | ||| || | || || |||| ||| || || |||||||||||
Sbjct 10793338 CTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| || || | ||||| ||||| || | || || || || || |||||||| |||
Sbjct 10792930 TGCCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGG 10792989
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| | || ||||||| || ||||| || || | || | | ||||| || || |
Sbjct 10792990 AAAGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTG 10793049
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||||||||| || ||||| || | | | || | || || | | ||| |
Sbjct 10793050 GGATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGA 10793109
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|||| || || || | |||||| ||||||||||| || || ||||||||
Sbjct 10793110 CTTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158
Score = 82.4 bits (90), Expect = 6e-11
Identities = 169/245 (69%), Gaps = 5/245 (2%)
Strand=Plus/Plus
Query 27013 AATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071
||||| || |||||||| | || || || | ||| | || || || ||||| ||||||
Sbjct 10792467 AATTACTGTCCTCCGCGAAGACGTAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTG 10792526
Query 27072 TAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTG 27130
||||| | | || |||| | ||||| | |||||| || || | || | | || ||
Sbjct 10792527 TAGTC-CGAAAGTGTGCGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTG 10792585
Query 27131 ATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG- 27189
|| || || | ||| || ||||| || ||| |||| |||| | ||||| |
Sbjct 10792586 GTCTGGGGGAATACCTTCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGA 10792645
Query 27190 TGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAG 27249
|||| |||||||| | || || | ||| || |||| || ||||| || |||||||||
Sbjct 10792646 TGGC-TCAACTTCCAACGTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCATAC 10792704
Query 27250 CTGCT 27254
|| ||
Sbjct 10792705 CTCCT 10792709
>seq2
Length=15265516
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || |||||||| ||| | | | || | || ||||||||||| |||
Sbjct 12970321 GTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCATCCTCGAGCTGTTTCCCG 12970262
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | |||||||| || |||||||| || | ||||||||||| ||||| ||||
Sbjct 12970261 GCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCCTGAATCTTAGCTTTC 12970202
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||| |||| | || || || || || || | ||||| ||||| |||
Sbjct 12970201 ACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTT 12970142
Query 27231 TTCACAAAGATTTGCAT 27247
|| || || || |||||
Sbjct 12970141 TTAACGAAAATCTGCAT 12970125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424923617555184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |