Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4 141 8e-29 seq7 136 3e-27 seq2 98.7 8e-16 >seq4 Length=12290766 Score = 141 bits (156), Expect = 8e-29 Identities = 974/1544 (63%), Gaps = 58/1544 (4%) Strand=Plus/Minus Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794 ||| || | || || | ||| | || |||||| || |||| || || || || || || Sbjct 1759310 ATCCTTCAGCAGGTGCTGATTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATA 1759251 Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854 || || ||| ||||||| ||||| || || || || ||||| || || | || Sbjct 1759250 GATATTAGAAGTGTACGGTTCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGC 1759191 Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914 |||||||| |||| | ||| ||||| |||| ||||| | | ||||||| || Sbjct 1759190 CGTGGGCATTGGAGCCAAAAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTT 1759131 Query 130915 CAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAG 130974 ||| || ||||||||| | | ||||| |||| | |||||| || | || | Sbjct 1759130 CAAATCGGACCAATCCCACAAATTTGTAGGAGTGAC---GCCCCACATGTCGTACTGCAA 1759074 Query 130975 TATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTT-CGACACGAGCCA 131033 | |||| |||| | || ||| | | || || || | | || |||| Sbjct 1759073 GACACCTTGACTGACCGGTGACCCTTCATAAGTCTCATACGGGCCGTACTTTTCG-GCCA 1759015 Query 131034 GGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATT 131093 | ||| ||||| ||||| || |||||||||| |||||| |||||| |||| Sbjct 1759014 GTTCGCAACTAGCCTCCAAGGCGCCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGG 1758955 Query 131094 GTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCT 131153 ||| || | ||| || |||| | | || | ||| || || || || || |||| Sbjct 1758954 CTTTAGCCTCCGGGCTATCAAAAGGCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCT 1758895 Query 131154 GTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGGTG--GG 131211 | | ||||| |||||||| || || | ||| | ||||||| | | || || Sbjct 1758894 GAACCCCAATTCCCACCGGCCTGTGGCGCAGATTCGACTTACGCG--CCTCTGGCAAAGG 1758837 Query 131212 ATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTT 131271 ||| || | ||||| | |||||| ||||| | |||| || |||| || Sbjct 1758836 ATAGTAATTCAGATCAATGACTTTGTTCAAATTCTTTGCCACAACTTTGGTGATTTCCTT 1758777 Query 131272 CAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGA 131331 ||| |||| || || | || | || || || || ||||| ||||| Sbjct 1758776 CAACTTGTTAAAGTCGTAGCCGCTCCTGTCCGCTTTCACGAACATGTTTACGGCGATTGA 1758717 Query 131332 CGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGCAATACTGAACAATTTCGGCGCAC 131389 |||| ||||| || || ||||||| | || | || ||| || ||||| | ||| Sbjct 1758716 GGCCAAGTTACAGACGGCGATTTCGTCGGGTGAT-GTAA-ACTCGACTATTTCCGTGCAT 1758659 Query 131390 AAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTC 131448 ||||| |||||| | || ||||| ||||||||||| |||||||| | | ||||| ||| Sbjct 1758658 AAATTGCTGCTCCTGATAGTGCCTAAATTTTGTTGGTTGCTTTT-CCTGTTACATGCGTC 1758600 Query 131449 CTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAAAGAG 131508 ||||| | |||||| || ||||| || || || || | | ||| || | | Sbjct 1758599 TTTGTAGAGCATGTAAGGGGTGCCAGTCTCCACCTGGGAGACGCAAATAGCGCGCCAAAC 1758540 Query 131509 TTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGT 131568 | || || | || || || | ||| | ||||| ||||||||||| | Sbjct 1758539 GTCCCGCGCTGGTAACTGTCTAACATAGCGACCGTCAGTCTCGTATTTTTCGTACAATTT 1758480 Query 131569 TTCAAAGT-TTTGGCCAAACGAACTGTCCAA---ATTGGGACATTCGCTGGGACACATTA 131624 ||| || | || | || ||| | | | ||| | | ||| | | |||||||| | Sbjct 1758479 TTCGAACTCTTCGCCCCAACAATCGG--CAAGGCCTGGTGAC--TGGTGTGGACACATCA 1758424 Query 131625 GCGACCA---CACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACG 131681 | ||||| | || |||| || || || ||| ||||| || ||| ||| || | Sbjct 1758423 GGGACCATTTCTCGTCGTT---TTTCACCCGGCGCATGAACAAGTCAGGCGTCCACAAAG 1758367 Query 131682 CGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAA 131741 || | |||| || | || || || || | ||| | |||| ||||| ||||||| Sbjct 1758366 CGAAGAACAAGTCGCGTGCCCTTAGCTGCTCCTTCCCCGTGTTTTTCTTCAAGTTTAAAA 1758307 Query 131742 AGTCCAAAATGTCCGCATGCCAGGGTTC----CAAATA-CAC-TGCCATTGCGCCTTTGC 131795 | |||||||| || |||||||| || || ||||| | | ||| | | |||| Sbjct 1758306 AATCCAAAATATCGGCATGCCAAGGCTCGAGGTAAATAGCGCAAGCCCCCGGTCTTTTG- 1758248 Query 131796 GCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCA 131855 || || ||||| | || | || | |||||| | |||||||| | |||| | | Sbjct 1758247 --TTCCCCCCTTGGTCCACGTAGCGCGCGGAGTTGTTAAAAACGCGCAAAACGGGCACAA 1758190 Query 131856 AACCG---------TTGGCGTTTC---CATTGGTGCTCTTAATGTAGCTGCCATTGGCTC 131903 ||| |||| | | | | ||| || || | | |||| ||||| | Sbjct 1758189 TCCCGTCTGAGACTTTGGGGGTGCCGGCCAAAGTGGTCCGAAAGGTGGTGCCTTTGGCCC 1758130 Query 131904 TGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTG 131962 | ||||||| ||| || | ||| || ||||| ||| || || | || |||| | Sbjct 1758129 GTAAGTTGTGAATACTGACGCCTAGACCGCCTGCCGT-TTTGGAAATCATGGCACATTGG 1758071 Query 131963 GTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAG 132022 || | | | | || || || | ||||| ||| | || | |||||| ||| Sbjct 1758070 GTCAAACAGCGCGAAATGCCCTCGAGATTGTCCTCGGGGAGAGTTACGAGAAAGCAGGAG 1758011 Query 132023 GACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGT 132082 || | || | | ||| | ||||| || | ||| || ||||||||||| || | Sbjct 1758010 GAGAGTTGGGGTTTGGGTGTTGCAGCTGAGAAGAGTGTAGGACTGGCGTGTGTGAAGTAT 1757951 Query 132083 TTTTTGGCCATGCACCGATACGATTGTATAGCGGACTCGATATC-GCCCAGATGTATGGT 132141 |||| | |||| | || | || || || || ||||| || | | | || ||| Sbjct 1757950 TTTTCTGACATGTAGTTGTAAGTTTCGATGGCTGAGTCGATGTCTGAGCCG-TGGATGCC 1757892 Query 132142 CAATGCGACCCGCATGTACATGTGTTGAATGCGCTCGGCCGTTTTGCCGTCGATTTTGAT 132201 | ||||| ||||| ||||||||| |||||| | ||||||||| |||||| | Sbjct 1757891 GACAGCGACGCGCATTAGCATGTGTTGGGGGCGCTCAACGATTTTGCCGTTGATTTTAAG 1757832 Query 132202 CAAATA--ACCGTTTTCCAAAGTTTTGAAACCAAAATATTTGTA 132243 ||| || | || || | ||||||||||| || || ||||| Sbjct 1757831 CAAGTAGGAACG--CTCGAGGGTTTTGAAACCGAAGTAATTGTA 1757790 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| ||||| || ||||| | || || || || || || ||||| ||| | Sbjct 488939 CCACCTCGCAGACGCAAAACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 488998 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||||||||| || |||| | |||||||||||| || || Sbjct 488999 AAAGTGCGTCCATCCTCCAGCTGTTTACCCGCAAAAATCAAACGCTGTTGATCGGGGGGA 489058 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || || || ||| | |||| | ||||||| | || || Sbjct 489059 ATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTTTCGATGGTGTCTGAAGGCTCGACC 489118 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||||| |||||||||||||| || |||||||| Sbjct 489119 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAAATTTGCAT 489165 >seq7 Length=16482863 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || ||||| ||||| || | || || || || || || ||||| ||| Sbjct 10794070 TGCCTCCCCTCAGACGCAAAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGG 10794129 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||||||||| |||||||| ||| |||| | |||||||||||| || | Sbjct 10794130 ACAAGGTGCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGAG 10794189 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| ||| | | | || | || || | || |||| Sbjct 10794190 GGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCAGAGGGCTCAA 10794249 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| ||||| || | ||||| || || || || || |||||||||||| Sbjct 10794250 CTTCCAGAGTGATGGTCTTGCCAGTGAGTGTCTTAACGAAGATTTGCATA 10794299 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| |||| |||||||| ||||||| || || |||||||||||||| ||||| | Sbjct 10792704 CCTCCTCGCAGACGCAATACTAAATGTAGGGTTGATTCTTTTTGAATATTATAGTCCGAC 10792763 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | ||||| | |||||||| ||||| || || | || | | ||| ||||| || || Sbjct 10792764 AGGGTGCGCCCATCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 10792823 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||| || ||| | | || | ||||||| || ||| ||| Sbjct 10792824 ATGCCTTCTTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCTGAGGGTTCTACT 10792883 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | || ||||||| || ||||| || |||||||| Sbjct 10792884 TCCAAAGTGATCGTCTTTCCCGTCAAGGTCTTCACGAAAATTTGCAT 10792930 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | ||||||||| || || | || || ||||||||||| ||||||||| Sbjct 10793158 TGCCACCTCGGAGCCGCAATACTAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 10793217 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || | |||||||||||||| |||||| | || | | ||| ||||| || | Sbjct 10793218 AGAGAGTTCGGCCATCTTCGAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGATCTGGGG 10793277 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || || || || | | |||| | |||||| | | ||| | Sbjct 10793278 GAATCCCCTCTTTGTCCTGAATTTTCGCCTTAACGTTTTCGATAGTGTCCGATGGTTCTA 10793337 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| | ||| || | || || |||| ||| || || ||||||||||| Sbjct 10793338 CTTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTTACGAAGATTTGCAT 10793386 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | ||||| ||||| || | || || || || || |||||||| ||| Sbjct 10792930 TGCCACCTCGGAGACGCAACACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGG 10792989 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || ||||||| || ||||| || || | || | | ||||| || || | Sbjct 10792990 AAAGAGTACGGCCGTCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGTG 10793049 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||||||| || ||||| || | | | || | || || | | ||| | Sbjct 10793050 GGATACCCTCTTTGTCTTGAATCTTAGCCTTGACGTTCTCAATTGTATCAGAAGGTTCGA 10793109 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || || | |||||| ||||||||||| || || |||||||| Sbjct 10793110 CTTCCAGGGTGATGGTTTTGCCAGTCAGAGTTTTAACGAAAATTTGCAT 10793158 Score = 82.4 bits (90), Expect = 6e-11 Identities = 169/245 (69%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 27013 AATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 ||||| || |||||||| | || || || | ||| | || || || ||||| |||||| Sbjct 10792467 AATTACTGTCCTCCGCGAAGACGTAAGACTAGATGAAGAGTGGATTCCTTTTGGATATTG 10792526 Query 27072 TAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTG 27130 ||||| | | || |||| | ||||| | |||||| || || | || | | || || Sbjct 10792527 TAGTC-CGAAAGTGTGCGACCATCTTCCAACTGTTTTCCCGCAAAGATCAATCTTTGCTG 10792585 Query 27131 ATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG- 27189 || || || | ||| || ||||| || ||| |||| |||| | ||||| | Sbjct 10792586 GTCTGGGGGAATACCTTCCTTATCTTGAATTTTGGCCTTCACATTTTCAATCGTGTCCGA 10792645 Query 27190 TGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAG 27249 |||| |||||||| | || || | ||| || |||| || ||||| || ||||||||| Sbjct 10792646 TGGC-TCAACTTCCAACGTAATTGTTTTCCCAGTCAACGTCTTCACGAAAATTTGCATAC 10792704 Query 27250 CTGCT 27254 || || Sbjct 10792705 CTCCT 10792709 >seq2 Length=15265516 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||| ||| | | | || | || ||||||||||| ||| Sbjct 12970321 GTGGATTCCTTCTGGATATTGTAATCGGAGAGGGTACGTCCATCCTCGAGCTGTTTCCCG 12970262 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||| || |||||||| || | ||||||||||| ||||| |||| Sbjct 12970261 GCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCCTCTTTATCCTGAATCTTAGCTTTC 12970202 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||| |||| | || || || || || || | ||||| ||||| ||| Sbjct 12970201 ACATTCTCGATAGTATCTGACGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTT 12970142 Query 27231 TTCACAAAGATTTGCAT 27247 || || || || ||||| Sbjct 12970141 TTAACGAAAATCTGCAT 12970125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424923617555184