Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 120 4e-22 seq3 87.8 2e-12 >seq4 Length=12290766 Score = 120 bits (132), Expect = 4e-22 Identities = 756/1197 (63%), Gaps = 38/1197 (3%) Strand=Plus/Minus Query 110368 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGA---GAG 110424 |||||||||||| ||||| | || | | ||| |||| | |||||| ||||| || Sbjct 1759592 ATAGTACATCCCTGTCTTTAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACATGAC 1759533 Query 110425 CTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCG 110484 | | ||| || | ||||| | ||||| ||||| |||||||| || || Sbjct 1759532 CCCATAATTCGG-GGCCGCAATATGAATA--TTCATCGACTGACTCTGGTCAATAAA-CG 1759477 Query 110485 CCCCCGT-TGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGAT 110543 | || | | |||||||||||||| | | | ||| | ||| ||||| ||||| || Sbjct 1759476 CGCCTCTATCAGCCGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTAT 1759417 Query 110544 AGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCA 110603 | || | || | ||| || || || | | || || || || ||||| ||| Sbjct 1759416 ACAGTTGTTTCAAATCGTCGGGAATCCCCGGAATGTTTTGAATCGAACCATAA---TTCG 1759360 Query 110604 CCATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGA 110660 | || | ||| |||||| | | ||| || || ||| | | || || | | Sbjct 1759359 CAATAATCTGATTCTTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCA 1759300 Query 110661 GGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTG 110720 |||||| || || | |||||| || | | | |||| ||||| || | | Sbjct 1759299 GGTGCTGATTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAG 1759240 Query 110721 TGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTG 110780 |||| ||||| |||||||||||||||| ||||| || || || || || ||||||| Sbjct 1759239 TGTACGGTTCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTG 1759180 Query 110781 GTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC----- 110835 | |||| | || || |||| ||| | | ||| || || | | | Sbjct 1759179 GAGCCAAAAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACC 1759120 Query 110836 -ATCCCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTT 110894 |||||| | | ||| | || | || |||||||||| |||| | || |||| Sbjct 1759119 AATCCCA--CAAATTTG---TAGGAGTGACGC-CCCACATGTCGTACTGCAAGACACCTT 1759066 Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 110954 | | || || || ||| | || ||||| | || | ||| |||| ||| || | Sbjct 1759065 GACTGACCGGTGACCCTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAAC 1759006 Query 110955 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 111014 | ||||||| || ||| ||| | ||||| || || | || | | || || | Sbjct 1759005 TAGCCTCCAAGGCGCCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCT 1758946 Query 111015 CATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCC 111073 | |||||| | | | ||| | ||| || |||| || || || ||||| || Sbjct 1758945 CCGGGCTATCAAAAG-GCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCA 1758887 Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT--CAACGGGATAAAAAT 111131 | || | || ||||| |||| ||| ||||| ||||| ||| ||| || ||| ||| Sbjct 1758886 ATTCCCACCGGCCTGTGGCGCAGATTCGACTTACGCGCC-TCTGGCAAAGG-ATAGTAAT 1758829 Query 111132 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 111191 | ||||||||| ||| | ||| || | |||| || |||||||| | | || | Sbjct 1758828 TCAGATCAATGACTTTGTTCAAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGT 1758769 Query 111192 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 111251 | | || | || | || | || || || | | ||||||||| ||||| | Sbjct 1758768 TAAAGTCGTAGCCGCTCCTGTCCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGT 1758709 Query 111252 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAAC 111311 | || || || | || || ||| |||| | ||||| || ||||| ||| | Sbjct 1758708 TACAGACGGCGATTTCGTCGGGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGC 1758649 Query 111312 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCA 111371 || | || || || ||||| | |||||| || ||| |||| || || || |||||||||| Sbjct 1758648 TCCTGATAGTGCCTAAATTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCA 1758589 Query 111372 TGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTG 111431 |||| || || || |||||| ||| || | |||||| |||||| || |||| Sbjct 1758588 TGTAAGGGGTGCCAGTCTCCACCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTG 1758529 Query 111432 GTACAATGGCGTTGGC---CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488 ||| | || | | | || || || | |||||| ||| ||| | ||| |||| Sbjct 1758528 GTA-ACTGTC--TAACATAGCGACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACT 1758472 Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 111545 | || ||| |||| || ||||||| || || |||||| | || ||||||| Sbjct 1758471 CTTCGCCCCAACAATCGGCAAGGCCTGGTGACTGGTGTGGACACATCAGGGACCATT 1758415 >seq3 Length=31381287 Score = 87.8 bits (96), Expect = 2e-12 Identities = 178/262 (68%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 181805 GTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTT 181864 |||||| || ||| | |||||||| || ||||| | ||||| | | ||||| || Sbjct 21014016 GTCTTTCCCTCCCGCCATCCGCGTACCGAACTGACCTCTCGGCTCCAACAAATTAATATT 21013957 Query 181865 GTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCAC 181923 || ||| | | | | ||||| |||||||| || || | |||||||||||| | Sbjct 21013956 ATTGCTACCGACAAAATTTTGAGCCAAGTTAACGATTGTCATACA-AAGGGACACTTCGC 21013898 Query 181924 CGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCAT 181983 |||| ||||| || ||| | || || ||| | |||||||||| ||||| || | ||| Sbjct 21013897 CGTGATGGTACGCCGACATTTCAGCCACAGAACCCGCCAACTGGGCCACTTTTACCTCAC 21013838 Query 181984 CTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCAT 182043 ||| ||| | |||||| | |||| ||||| | ||| || || ||||| | Sbjct 21013837 GTTTATCGTTACGTTTGAAGCAGGTGAACATTACTTTACGCTGGCCGGGTTTAAGACCGT 21013778 Query 182044 CCGCCATATGGGCAATAGAGCG 182065 || ||| | | ||| ||||| Sbjct 21013777 CCACCAGACATGGAATCGAGCG 21013756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628015655467200