Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10]
2,082 sequences; 165,944,485 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq4 120 4e-22
seq3 87.8 2e-12
>seq4
Length=12290766
Score = 120 bits (132), Expect = 4e-22
Identities = 756/1197 (63%), Gaps = 38/1197 (3%)
Strand=Plus/Minus
Query 110368 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGA---GAG 110424
|||||||||||| ||||| | || | | ||| |||| | |||||| ||||| ||
Sbjct 1759592 ATAGTACATCCCTGTCTTTAAACCCTTATCCCACCCGTAGAAATGCATGGAAGACATGAC 1759533
Query 110425 CTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCG 110484
| | ||| || | ||||| | ||||| ||||| |||||||| || ||
Sbjct 1759532 CCCATAATTCGG-GGCCGCAATATGAATA--TTCATCGACTGACTCTGGTCAATAAA-CG 1759477
Query 110485 CCCCCGT-TGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGAT 110543
| || | | |||||||||||||| | | | ||| | ||| ||||| ||||| ||
Sbjct 1759476 CGCCTCTATCAGCCGCCATATCAATAATAACTTTCTGCGAAATCTCCCAGACTGTTTTAT 1759417
Query 110544 AGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCA 110603
| || | || | ||| || || || | | || || || || ||||| |||
Sbjct 1759416 ACAGTTGTTTCAAATCGTCGGGAATCCCCGGAATGTTTTGAATCGAACCATAA---TTCG 1759360
Query 110604 CCATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGA 110660
| || | ||| |||||| | | ||| || || ||| | | || || | |
Sbjct 1759359 CAATAATCTGATTCTTCATCGTATCGTCCCAAAGCCCCCTCTCAGTCAAATCCTTCAGCA 1759300
Query 110661 GGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTG 110720
|||||| || || | |||||| || | | | |||| ||||| || | |
Sbjct 1759299 GGTGCTGATTCACGACTTGAAACTCCCCAGACAACACCCGCCTCACATAGATATTAGAAG 1759240
Query 110721 TGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTG 110780
|||| ||||| |||||||||||||||| ||||| || || || || || |||||||
Sbjct 1759239 TGTACGGTTCGGTCGATTCATTATTACCCAAAATTTGGGCAGTCGAAGCCGTGGGCATTG 1759180
Query 110781 GTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC----- 110835
| |||| | || || |||| ||| | | ||| || || | | |
Sbjct 1759179 GAGCCAAAAGTAGCGAATTGCGAACACCGTATTTGGCGATTTTTTTTTTCAAATCGGACC 1759120
Query 110836 -ATCCCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTT 110894
|||||| | | ||| | || | || |||||||||| |||| | || ||||
Sbjct 1759119 AATCCCA--CAAATTTG---TAGGAGTGACGC-CCCACATGTCGTACTGCAAGACACCTT 1759066
Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 110954
| | || || || ||| | || ||||| | || | ||| |||| ||| || |
Sbjct 1759065 GACTGACCGGTGACCCTTCATAAGTCTCATACGGGCCGTACTTTTCGGCCAGTTCGCAAC 1759006
Query 110955 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 111014
| ||||||| || ||| ||| | ||||| || || | || | | || || |
Sbjct 1759005 TAGCCTCCAAGGCGCCGTAATAAAGCGTTTCGAAAATTTGCCGGTTTAGGGCTTTAGCCT 1758946
Query 111015 CATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCC 111073
| |||||| | | | ||| | ||| || |||| || || || ||||| ||
Sbjct 1758945 CCGGGCTATCAAAAG-GCATTCGCAGGAGAATGAACGCATCAGCCAGGCCCTGAACCCCA 1758887
Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT--CAACGGGATAAAAAT 111131
| || | || ||||| |||| ||| ||||| ||||| ||| ||| || ||| |||
Sbjct 1758886 ATTCCCACCGGCCTGTGGCGCAGATTCGACTTACGCGCC-TCTGGCAAAGG-ATAGTAAT 1758829
Query 111132 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 111191
| ||||||||| ||| | ||| || | |||| || |||||||| | | || |
Sbjct 1758828 TCAGATCAATGACTTTGTTCAAATTCTTTGCCACAACTTTGGTGATTTCCTTCAACTTGT 1758769
Query 111192 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 111251
| | || | || | || | || || || | | ||||||||| ||||| |
Sbjct 1758768 TAAAGTCGTAGCCGCTCCTGTCCGCTTTCACGAACATGTTTACGGCGATTGAGGCCAAGT 1758709
Query 111252 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAAC 111311
| || || || | || || ||| |||| | ||||| || ||||| ||| |
Sbjct 1758708 TACAGACGGCGATTTCGTCGGGTGATGTAAACTCGACTATTTCCGTGCATAAATTGCTGC 1758649
Query 111312 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCA 111371
|| | || || || ||||| | |||||| || ||| |||| || || || ||||||||||
Sbjct 1758648 TCCTGATAGTGCCTAAATTTTGTTGGTTGCTTTTCCTGTTACATGCGTCTTTGTAGAGCA 1758589
Query 111372 TGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTG 111431
|||| || || || |||||| ||| || | |||||| |||||| || ||||
Sbjct 1758588 TGTAAGGGGTGCCAGTCTCCACCTGGGAGACGCAAATAGCGCGCCAAACGTCCCGCGCTG 1758529
Query 111432 GTACAATGGCGTTGGC---CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488
||| | || | | | || || || | |||||| ||| ||| | ||| ||||
Sbjct 1758528 GTA-ACTGTC--TAACATAGCGACCGTCAGTCTCGTATTTTTCGTACAATTTTTCGAACT 1758472
Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 111545
| || ||| |||| || ||||||| || || |||||| | || |||||||
Sbjct 1758471 CTTCGCCCCAACAATCGGCAAGGCCTGGTGACTGGTGTGGACACATCAGGGACCATT 1758415
>seq3
Length=31381287
Score = 87.8 bits (96), Expect = 2e-12
Identities = 178/262 (68%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 181805 GTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTT 181864
|||||| || ||| | |||||||| || ||||| | ||||| | | ||||| ||
Sbjct 21014016 GTCTTTCCCTCCCGCCATCCGCGTACCGAACTGACCTCTCGGCTCCAACAAATTAATATT 21013957
Query 181865 GTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCAC 181923
|| ||| | | | | ||||| |||||||| || || | |||||||||||| |
Sbjct 21013956 ATTGCTACCGACAAAATTTTGAGCCAAGTTAACGATTGTCATACA-AAGGGACACTTCGC 21013898
Query 181924 CGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCAT 181983
|||| ||||| || ||| | || || ||| | |||||||||| ||||| || | |||
Sbjct 21013897 CGTGATGGTACGCCGACATTTCAGCCACAGAACCCGCCAACTGGGCCACTTTTACCTCAC 21013838
Query 181984 CTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCAT 182043
||| ||| | |||||| | |||| ||||| | ||| || || ||||| |
Sbjct 21013837 GTTTATCGTTACGTTTGAAGCAGGTGAACATTACTTTACGCTGGCCGGGTTTAAGACCGT 21013778
Query 182044 CCGCCATATGGGCAATAGAGCG 182065
|| ||| | | ||| |||||
Sbjct 21013777 CCACCAGACATGGAATCGAGCG 21013756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628015655467200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |