Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 100 4e-16 seq5 91.5 2e-13 >seq3 Length=31381287 Score = 100 bits (110), Expect = 4e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 12058 AGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATG 12117 ||| | ||||||| || ||||| || | || | |||||||| |||||||||||||| | Sbjct 28596940 AGTGCCTTGAATTAGGCAACCTGGACTCGAAGCGCGACTGGGGCCATGCCAAGGACTACG 28596881 Query 12118 TTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGG 12177 | || |||||||||||| | || || || ||| ||||||| | ||| | || | | Sbjct 28596880 TGGAGGCCATGTGGCTCATGCTGCAGCAGCCCGAGCCGGACGACTTCGTCATAGCTTCCG 28596821 Query 12178 GGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTTT-AGGGAAGTTGGAAAGGTG 12236 ||||||| ||| || ||||||| |||||| | ||||| || | || || |||| | Sbjct 28596820 GGGAGACGCACAGTGTGCGGGAGTTTGTTGAGGCG-GCTTTCAGACACGTGGGGAAGGAG 28596762 Query 12237 GTCACATGGGAAGG 12250 | |||||||| Sbjct 28596761 ATTCTGTGGGAAGG 28596748 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/211 (70%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 179035 TTTGTGAAGATGTACCTCGTTTGA--GACGCA-TCTTTGCCACCCATGAGACGCGTCCCA 179091 |||||||| ||||| |||| || | ||| ||||| || ||| | ||||| || Sbjct 21014045 TTTGTGAAAATGTATCTCG---GACTGGCGCTGTCTTTCCCTCCCGCCATCCGCGTACCG 21013989 Query 179092 AATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAAC 179151 || ||||| | ||||| | | ||| ||||| || ||| | | | | ||||| Sbjct 21013988 AACTGACCTCTCGGCTCCAACAAATTAATATTATTGCTACCGACAAAATTTTGAGCCAAG 21013929 Query 179152 TTGACAATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCAC 179210 || || || || || | ||||| ||||| ||||||||||| |||||| | || ||||| Sbjct 21013928 TTAACGATTGTCATACAA-AGGGACACTTCGCCGTGATGGTACGCCGACATTTCAGCCAC 21013870 Query 179211 ATATGCCGCCAACTGCGCCACCTTCATCTCA 179241 | | |||||||||| ||||| || | |||| Sbjct 21013869 AGAACCCGCCAACTGGGCCACTTTTACCTCA 21013839 >seq5 Length=15459558 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/254 (69%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || || || |||||||| | || || |||||||| || || ||||| Sbjct 2624767 GGCAAAATCGCAATGTAGGCCCTCGTCCCTCGAAATCAGTTCATTGGAAAATGTGAGACC 2624708 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| ||| |||||| || | ||||||||||| | ||| |||||||||||| || Sbjct 2624707 TGGCATAAGATTCCGCTTTTTAAGCCAGAAAATCGAAGCAAAGCTGCCAGAGAAGAAAAT 2624648 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||| || || || ||||| | || || || |||| | | ||| | | | Sbjct 2624647 CCCTTCGACGGCGGCAAACGCCACGATTCGTTCGCCAAAAGTCGCGTTCTTGCTGTTTAT 2624588 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTCA- 130252 |||| || ||||| | ||||| |||| | ||| || | |||| |||||| || | Sbjct 2624587 CCACAGCAAGGCCCAGTCGGCCTTCTTCTTAACACAGGGCAGCGTCTCGATCGCATTGAA 2624528 Query 130253 -AAGAGTTCCTTCT 130265 |||| ||||||| Sbjct 2624527 CAAGAACTCCTTCT 2624514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618419105223920