Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 100 3e-16 >seq5 Length=15459558 Score = 100 bits (110), Expect = 3e-16 Identities = 168/241 (70%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 59893 TGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGT 59952 ||||| ||| || |||||| ||| ||||| | || || || |||||| ||| || Sbjct 2624526 TGTTCAATGCGATCGAGACGCTGCCCTGTGTTAAGAAGAAGGCCGACTGGGCCTTGCTGT 2624585 Query 59953 GGATGAGTC-CTGGA--GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAG 60009 |||| | | || || | |||| |||| || | || ||||| ||| |||| Sbjct 2624586 GGATAAACAGCAAGAACGCGACTTTTGGCGAACGAATCGTGGCGTTTGCCGCCGTCGAAG 2624645 Query 60010 GAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGC 60069 | || |||||||||||| || | | ||||||||||| |||||||| || |||| Sbjct 2624646 GGATTTTCTTCTCTGGCAGCTTTGCTTCGATTTTCTGGCTTAAAAAGCGGAATCTTATGC 2624705 Query 60070 CGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTG 60129 | || || | || ||||| || |||||||| ||||||||||||| ||| || |||| Sbjct 2624706 CAGGTCTCACATTTTCCAATGAACTGATTTCGAGGGACGAGGGCCTACATTGCGATTTTG 2624765 Query 60130 C 60130 | Sbjct 2624766 C 2624766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548510524642080