Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tribolium_20castaneum_20[refseq_20GCF_5F000002335.3_202016-03-10] 2,082 sequences; 165,944,485 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 >seq3 Length=31381287 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| |||||| || | ||||||||||| || | || || || ||||| || || ||| Sbjct 28596791 CAACAAACTCCCGCACACTGTGCGTCTCCCCGGAAGCTATGACGAAGTCGTCCGGCTCGG 28596850 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCT 159058 |||| || |||||||||||||||||||| ||||| |||| || || ||||||||||||| Sbjct 28596851 GCTGCTGCAGCATGAGCCACATGGCCTCCACGTAGTCCTTGGCATGGCCCCAGTCGCGCT 28596910 Query 159059 TGGCATCCATGTTCCC 159074 | | |||| ||| || Sbjct 28596911 TCGAGTCCAGGTTGCC 28596926 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 124482 GCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCG 124541 ||| |||| | |||||| || | ||||||||||| || | | || ||||| || || Sbjct 28596784 GCCGCCTCAACAAACTCCCGCACACTGTGCGTCTCCCCGGAAGCTATGACGAAGTCGTCC 28596843 Query 124542 GGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAG 124601 || | |||||||| ||| ||||||||||| | |||||||||| || || |||||| Sbjct 28596844 GGCTCGGGCTGCTGCAGCATGAGCCACATGGCCTCCACGTAGTCCTTGGCATGGCCCCAG 28596903 Query 124602 TCGCGCTTGGCATCCAGGTTTCC 124624 |||||||| | |||||||| || Sbjct 28596904 TCGCGCTTCGAGTCCAGGTTGCC 28596926 Score = 89.7 bits (98), Expect = 6e-13 Identities = 290/447 (65%), Gaps = 14/447 (3%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 ||||| || || || || ||||| || |||| || |||||| | ||||| || || Sbjct 21014195 CCGGTGCCTATACCGTCAGCACCATTAACCAAAACCATCGGTATGATAGGAATATACCAC 21014136 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 |||| || | || ||| || || | | | | |||||| | ||| || | ||| Sbjct 21014135 ACCGGTTCAATCTTCTGATTATCTTCAAACTCATGTTTCAACAAATAATCATCGGAAGGA 21014076 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | || ||| ||||| | ||| || ||||| ||||||| | ||||| Sbjct 21014075 TTAAAAATCATCCGAGTTAAAGGCGACATCTTTGTGAAAATGTATCTCGGACTGGCGCTG 21014016 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 || || || || |||| |||||| || ||||| || ||||| | | || | || Sbjct 21014015 TCTTTCCCTCCCGCCATCCGCGTACCGAACTGACCTCTCGGCTCCAACAAATTAATATTA 21013956 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACT--CGCTTCAC 152173 ||| || || ||||| |||||||| || || || || | | || | | |||| | Sbjct 21013955 TTGCTACCGACAAAATTTTGAGCCAAGTTAACGATTGT--CATACAAAGGGACACTTCGC 21013898 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-C 152232 |||| || ||||||| | || || | | ||||||||||| ||||| || | || | Sbjct 21013897 CGTGATGGTACGCCGACATTTCAGCCACAGAACCCGCCAACTGGGCCACTTTTACCTCAC 21013838 Query 152233 GT----CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288 || ||| | ||| ||| |||| | | || || || |||||| ||||| | Sbjct 21013837 GTTTATCGTTACGTT-----TGAAGCAGGTGAACATTACTTTACGCTGGCCGGGTTTAAG 21013783 Query 152289 ACCGTCCACCACGTGAGGAATCGAACG 152315 ||||||||||| |||||||| || Sbjct 21013782 ACCGTCCACCAGACATGGAATCGAGCG 21013756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 184/276 (67%), Gaps = 10/276 (4%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| | | || || || || || || || | ||||||||||| || Sbjct 21014042 GTGAAAATGTATCTCGGACTGGCGCTGTCTTTCCCTCCCGCCATCCGCGTACCGAACTGA 21013983 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||||||||||| | || | || ||| || ||||| |||||||||||||| || Sbjct 21013982 CCTCTCGGCTCCAACAAATTAATATTATTGCTACCGACAAAATTTTGAGCCAAGTTAACG 21013923 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||| | | || || || || ||||||| | || ||||| | ||| Sbjct 21013922 ATTGTCATACAAAGGGACACTTCGCCGTGATGGTACGCCGACATTTCAGCCACAGAACCC 21013863 Query 117485 GCCAGCTGAGCCAC-----CTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAA 117539 |||| ||| ||||| | ||| || | ||| | || |||| ||||| | | Sbjct 21013862 GCCAACTGGGCCACTTTTACCTCACGTTTATCGTTACGT-----TTGAAGCAGGTGAACA 21013808 Query 117540 TCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCA 117575 | || || ||||| | || || ||||| ||| ||| Sbjct 21013807 TTACTTTACGCTGGCCGGGTTTAAGACCGTCCACCA 21013772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547201758703600